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projects:workgroups:est-methods [2018/04/11 12:06] schuemie |
projects:workgroups:est-methods [2021/08/06 05:12] (current) schuemie |
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Specific goals: | Specific goals: | ||
- | * Develop the [[documentation:software:methods_library|Methods library]] | + | * Develop the [[https://ohdsi.github.io/Hades/|Health Analytics Data-to-Evidence Suite (HADES)]] |
* Specify [[development:best_practices_estimation|OHDSI Best Practices for Estimating Population-Level Effects]] | * Specify [[development:best_practices_estimation|OHDSI Best Practices for Estimating Population-Level Effects]] | ||
+ | **Start Date:** March 5, 2014 | ||
**Workgroup Leads:** [[http://ohdsi.org/who-we-are/collaborators/martijn-schuemie/|Martijn Schuemie]],[[http://ohdsi.org/who-we-are/collaborators/marc-suchard/|Marc Suchard]] | **Workgroup Leads:** [[http://ohdsi.org/who-we-are/collaborators/martijn-schuemie/|Martijn Schuemie]],[[http://ohdsi.org/who-we-are/collaborators/marc-suchard/|Marc Suchard]] | ||
Line 17: | Line 18: | ||
**Members:** | **Members:** | ||
- | * Alejandro Schuler | + | <WRAP column 40%> |
- | * Chan Youseng | + | * Dani Prieto Alhambra |
- | * Dukyong Yoon | + | * Seng Chan You |
+ | * Aki Nishimura | ||
* George Hripcsak | * George Hripcsak | ||
* Ian Wong | * Ian Wong | ||
Line 26: | Line 28: | ||
* Jing Huang | * Jing Huang | ||
* Nicole Pratt | * Nicole Pratt | ||
+ | * Ty Stanford | ||
* Nigam Shah | * Nigam Shah | ||
+ | </WRAP> | ||
+ | <WRAP column 40%> | ||
+ | * Teng Liaw | ||
* Patrick Ryan | * Patrick Ryan | ||
* Peter Rijnbeek | * Peter Rijnbeek | ||
Line 36: | Line 42: | ||
* Yong Chen | * Yong Chen | ||
* Yuxi Tian | * Yuxi Tian | ||
+ | * Jianxiao Yang | ||
+ | * Yuchen (Mimi) Guo | ||
+ | </WRAP> | ||
- | **Start Date:** March 5, 2014 | + | </WRAP> |
+ | |||
+ | |||
+ | ==== Meetings ==== | ||
+ | |||
+ | Because of time differences we have separate meetings for the Eastern (Asia-Pacific) and Western (Europe + Americas) hemispheres. Starting 2020, the Population-Level Estimation meetings will be combined with the Patient-Level Prediction meetings | ||
+ | |||
+ | === Eastern hemisphere === | ||
+ | |||
+ | Meetings are held on the first Wednesday of every month. Next meeting: | ||
+ | |||
+ | * September 1, 2021 | ||
+ | |||
+ | Meetings will take place at these times (DST where appropriate): | ||
+ | |||
+ | * 5pm Sydney | ||
+ | * 4:30pm Adelaide | ||
+ | * 4pm South Korea | ||
+ | * 3pm Hong Kong / Taiwan | ||
+ | * 9am Central European time | ||
+ | * 8am UK time | ||
+ | |||
+ | Teams meeting details: | ||
+ | |||
+ | URL: [[https://teams.microsoft.com/l/meetup-join/19%3a103b681f42444150b1823664ce59ecd1%40thread.tacv2/1602144468776?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%22dac1472c-1cc6-41dc-9cc7-c4720f7798de%22%7d|Join Microsoft Teams Meeting]] | ||
+ | |||
+ | === Western hemisphere === | ||
+ | |||
+ | Meetings are held on the first Thursday of each month. Next meeting: | ||
+ | |||
+ | * September 2, 2021 | ||
+ | |||
+ | Meetings will take place at these times (DST where appropriate): | ||
+ | |||
+ | * 6pm Central European time | ||
+ | * 5pm UK time | ||
+ | * 12pm (noon) New York / New Jersey / Pennsylvania | ||
+ | * 9am Los Angeles / Stanford | ||
+ | |||
+ | Teams meeting details: | ||
+ | |||
+ | URL: [[https://teams.microsoft.com/l/meetup-join/19%3a103b681f42444150b1823664ce59ecd1%40thread.tacv2/1602144628432?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%22dac1472c-1cc6-41dc-9cc7-c4720f7798de%22%7d|Join Microsoft Teams Meeting]] | ||
- | **WG Minutes:** | + | ==== Workgroup meeting notes ==== |
* March 30, 2016 (Western hemisphere): //Workgroup objectives//. {{:projects:workgroups:wg_2nd_kickoff.pptx|Slides}} and {{:projects:workgroups:minutes_mar-30-2016.docx|minutes}} | * March 30, 2016 (Western hemisphere): //Workgroup objectives//. {{:projects:workgroups:wg_2nd_kickoff.pptx|Slides}} and {{:projects:workgroups:minutes_mar-30-2016.docx|minutes}} | ||
* April 6, 2016 (Eastern hemisphere): //Workgroup objectives//.{{:projects:workgroups:wg_2nd_kickoff_east.pptx|Slides}} and {{:projects:workgroups:minutes_apr_6_2016.docx|minutes}} | * April 6, 2016 (Eastern hemisphere): //Workgroup objectives//.{{:projects:workgroups:wg_2nd_kickoff_east.pptx|Slides}} and {{:projects:workgroups:minutes_apr_6_2016.docx|minutes}} | ||
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* March 1, 2018: //Building the Large Evidence Generator//. {{:projects:workgroups:wg_building_the_large_evidence_generator.pptx|Slides}} and {{:projects:workgroups:notes_1_march_2018.docx|minutes}}. | * March 1, 2018: //Building the Large Evidence Generator//. {{:projects:workgroups:wg_building_the_large_evidence_generator.pptx|Slides}} and {{:projects:workgroups:notes_1_march_2018.docx|minutes}}. | ||
* March 7, 2018: //Building the Large Evidence Generator//. {{:projects:workgroups:wg_building_the_large_evidence_generator_-_eastern_hemisphere.pptx|Slides}} and {{:projects:workgroups:notes_7_march_2018.docx|minutes}}. | * March 7, 2018: //Building the Large Evidence Generator//. {{:projects:workgroups:wg_building_the_large_evidence_generator_-_eastern_hemisphere.pptx|Slides}} and {{:projects:workgroups:notes_7_march_2018.docx|minutes}}. | ||
- | * March 15, 2018: //An OHDSI approach to risk factor identification//. {{:projects:workgroups:wg_risk_factors.pptx|Slides}} and {{:projects:workgroups:notes_15_march_2018.docx|minutes}} | + | * March 15, 2018: //An OHDSI approach to risk factor identification//. {{:projects:workgroups:wg_risk_factors.pptx|Slides}} and {{:projects:workgroups:notes_15_march_2018.docx|minutes}} |
* April 4, 2018: //Findings in Korea//. {{:projects:workgroups:matching_hidden_variable_18.4.4_.pptx|Slides}} and {{:projects:workgroups:notes_4_april.docx|minutes}}. | * April 4, 2018: //Findings in Korea//. {{:projects:workgroups:matching_hidden_variable_18.4.4_.pptx|Slides}} and {{:projects:workgroups:notes_4_april.docx|minutes}}. | ||
+ | * May 10, 2018: //Study package skeleton and LEGEND updates//. {{:projects:workgroups:wg_package_skeleton.pptx|Slides}} and {{:projects:workgroups:notes_10_may.docx|minutes}}. | ||
+ | * June 7, 2018: //Conquering Massive Clinical Models with GPU Parallelized Logistic Regression//. {{:projects:workgroups:ple_call.pdf|Slides}} and {{:projects:workgroups:notes_7_june.docx|minutes}}. | ||
+ | * June 13, 2018: //Study package skeleton and LEGEND updates//. {{:projects:workgroups:wg_package_skeleton_-_eastern_hemisphere.pptx|Slides}} and {{:projects:workgroups:notes_13-june.docx|minutes}}. | ||
+ | * July 5, 2018: //IC Temporal Pattern Discovery//. {{ :projects:workgroups:notes_5-july.docx |Minutes}}. | ||
+ | * September 5, 2018: //CohortMethod v3.0//. {{ :projects:workgroups:wg_cohort_method_v3.pptx |Slides}} and {{ :projects:workgroups:notes_5-september.docx |minutes}}. | ||
+ | * September 13, 2018: //CohortMethod v3.0//. {{ :projects:workgroups:wg_cohort_method_v3_western_v6.pptx |Slides}} and {{ :projects:workgroups:notes_13-september.docx |minutes}}. | ||
+ | * October 31, 2018: //ATLAS Estimation//. {{ :projects:workgroups:wg_atlas_estimation.pptx |Slides}} and {{ :projects:workgroups:notes_31-october.docx |minutes}}. | ||
+ | * November 8, 2018: //ATLAS Estimation//. {{ :projects:workgroups:wg_atlas_estimation_-_western_hemisphere.pptx |Slides}} and {{ :projects:workgroups:notes_8-november.docx |minutes}}. | ||
+ | * November 14, 2018: //Phenotype library and NSAIDS-AKI//. {{ :projects:workgroups:notes_14-november.docx |Slides}} and {{ :projects:workgroups:standard_phenotype_library_18.11.14_.pptx |minutes}}. | ||
+ | * December 12, 2018: //OHDSI updates//. {{ :projects:workgroups:wg_ohdsi_update_dec_2018.pptx |Slides}} and {{ :projects:workgroups:notes_12-december-2018.docx |minutes}}. | ||
+ | * December 20, 2018: //OHDSI updates//. {{ :projects:workgroups:wg_ohdsi_update_dec_2018_western.pptx |Slides}} and {{ :projects:workgroups:notes_20_december_2018.docx |minutes}}. | ||
+ | * January 31, 2019: //OHDSI Network Studies lessons learned//. {{ :projects:workgroups:wg_network_studies_best_practices.pptx |Slides}}, {{ :projects:workgroups:notes_31_jan_2019.docx |minutes}}, [[https://drive.google.com/a/ohdsi.org/file/d/12Uvhcu0F8py9WOVoAhSwuOpaLn7ssmRV/view?usp=drive_web | recording]] | ||
+ | * February 20, 2019: //Large scale evidence generation for the utilisation and safety of biologic medicines//. {{ :projects:workgroups:large_scale_evidence_generation_for_the_utilisation_and_safety_of_biologic_medicines_ohdsi_jan2019.pptx |Slides}} and {{ :projects:workgroups:notes_20-feb-2019.docx |minutes}}. | ||
+ | * February 28, 2019: //Network study obstacles//. {{ :projects:workgroups:wg_network_study_obstacles.pptx |Slides}} and {{ :projects:workgroups:notes_28_feb_2019.docx |minutes}}. | ||
+ | * March 13, 2019: //Network study issues and solutions//. {{ :projects:workgroups:wg_network_studies_issues_eastern_hemisphere_.pptx |Slides}} and {{ :projects:workgroups:notes_13-march-2019.docx |minutes}}. | ||
+ | * April 25, 2019: //Comparative SCCS//. {{ :projects:workgroups:csccs_ohdsi_ple_wg_20190425.pptx |Slides}} and {{ :projects:workgroups:notes_25_april.docx |minutes}}. | ||
+ | * May 23, 2019: //Covariate selection strategies, Negative controls, and Empirical calibration//. {{ :projects:workgroups:covariatesnegcontrolscalibrationv01.pptx |Slides}} and {{ :projects:workgroups:notes_23_may.docx |minutes}}. | ||
+ | * May 29, 2019: //Comparing Ticagrelor and clopidogrel//. {{ :projects:workgroups:ohdsi_tica_19.5.29.pdf |Slides}} and {{ :projects:workgroups:notes_29_may.docx |minutes}}. | ||
+ | * June 12, 2019: //CDM, opioid and other research at UNSW//. {{ :projects:workgroups:20190612_ohdsi_epbrn_presentation_v0.3.pdf |Slides}} and {{ :projects:workgroups:notes_june_12_2019.docx |minutes}}. | ||
+ | * June 26, 2019: //ETL: Beyond the basics//. {{ :projects:workgroups:wg_etl_best_practices_v02.pptx |Slides}} | ||
+ | * January 8, 2020: //Joint PLP and PLP meeting (East)//. {{ :projects:workgroups:wgmeeting8jan2020.docx |Notes}} | ||
+ | * January 9, 2020: //Joint PLP and PLP meeting (West)//. [[https://drive.google.com/file/d/1V5AiQjrPbEFKiw8-bq2PJw24B-8xV8JE/view?usp=sharing|Recording]] and {{ :projects:workgroups:wg_meeting_notes_9jan2020.docx |Notes}} | ||
+ | * February 5, 2020: //ETL & DQ, sensitivity & feasibility//. [[https://drive.google.com/file/d/1Z1oGBo-CRwwco_w_BQffAa4N0W8sMWM6/view?usp=sharing|Recording]] and {{ :projects:workgroups:wgnotes5feb2020.docx |Notes}} | ||
+ | * February 6, 2020: //Using GPUs for logistic regression//. [[https://drive.google.com/file/d/1IkT_4j9yUgk2yY7Qtr9_j5bo_lXaDfzz/view?usp=sharing|Recording]] and {{ :projects:workgroups:methodswg6feb2020.docx |Notes}} | ||
+ | * March 4, 2020: //CohortDiagnostics//. [[https://drive.google.com/file/d/1vU95gtYG1y37xXDN6EhuKtDh4LJ338U8/view?usp=sharing|Recording]] and {{ :projects:workgroups:notes_plp_ple_meeting_marc_4_2020.docx |Notes}} | ||
+ | * March 5, 2020: //Evaluating ML for propensity scores & CohortDiagnostics//. {{ :projects:workgroups:notes_plp_marc_5_2020.docx |Notes}} | ||
+ | * May 6, 2020: //Disease Risk Scores//. [[https://drive.google.com/file/d/1kTxsN_jjN1wLgMEhsLHZ3AByONf6dSbF/view?usp=sharing|Recording]], {{ :projects:workgroups:drs.pptx |Slides}}, and {{ :projects:workgroups:wg_meeting_may_6_2020.docx |Notes}} | ||
+ | * May 7, 2020: //Disease Risk Scores//. [[https://drive.google.com/file/d/1x24-Cp2BoVIm4JYjdAhbsPO7NsDf9x0J/view?usp=sharing|Recording]], {{ :projects:workgroups:drs.pptx |Slides}}, and {{ :projects:workgroups:plpplemeeting7may2020.docx |Notes}} | ||
+ | * June 3, 2020: //Seek COVER//. {{ :projects:workgroups:noteswgmeeting3june2020.docx |Notes}} | ||
+ | * June 4, 2020: //Seek COVER//. [[https://drive.google.com/file/d/1RtdMfvmzOAfsGaKpDh0zg1A3L7WC3Slz/view?usp=sharing|Recording]] and {{ :projects:workgroups:noteswgmeeting4june2020.docx |Notes}} | ||
+ | * July 1, 2020: //Representation Learning//. [[https://drive.google.com/file/d/1ZzURKYbc77WhtZXVI-pGvJpOOcWxhvvj/view?usp=sharing|Recording]], {{ :projects:workgroups:representation-learning_ps_model.pdf |Slides}}, and {{ :projects:workgroups:noteswgmeeting2020-7-1.docx|Notes}} | ||
+ | * July 2, 2020: //Distributed model fitting//. [[https://drive.google.com/file/d/1UGhoT8BcDs6h-W84IAEeU6VHF2flRugU/view?usp=sharing|Recording]] | ||
+ | * August 6, 2020: //Feature importance//. {{ :projects:workgroups:pleplp_featureimport.pptx |Slides}} | ||
+ | * September 2, 2020: //Heterogeneity of Treatment Effects//. [[https://drive.google.com/file/d/1RBMhV8x5HkcUFsT0nYMnFEoUUSf8rrVT/view?usp=sharing|Recording]] | ||
+ | * September 3, 2020: //Non-normal meta-analysis//. {{ :projects:workgroups:wg_non-normal_meta-analysis.pptx |Slides}} and [[https://drive.google.com/file/d/1A9ktgPPlPTK97q9Tr61xva5XgpRjtuHg/view?usp=sharing|Recording]] | ||
+ | * October 1, 2020: //Synthesizing data using GANs//. [[https://drive.google.com/file/d/1l89R1gLK_QhxejKTVEmIQoTwJJfQ_Yur/view?usp=sharing|Recording]] and [[https://arxiv.org/abs/2005.13510v3|Paper]] | ||
+ | * October 7, 2020: //Learning curves in predictive modeling//. [[https://drive.google.com/file/d/1DosnYqogxS9LzWkWCEnxNt_0Y4RASJ-u/view?usp=sharing|Recording]] | ||
+ | * November 4, 2020: //White Bandicoot//. [[https://drive.google.com/file/d/1bDPLrkX7BmKiE_c59C3CU7mrVE7KxLv7/view?usp=sharing|Recording]] | ||
+ | * November 5, 2020: //Methods for the emulation of target surgical trials//. [[https://drive.google.com/file/d/18uc63bz3gnrfhwr7CwjnEYO_16Qr6aHQ/view?usp=sharing|Recording]] | ||
+ | * December 2, 2020: //Representational Learning//. [[https://drive.google.com/file/d/1_RlmTpqI7BBdRu4dV4kkC50cT8ZpMVro/view?usp=sharing|Recording]] | ||
+ | * December 3, 2020: //Pharmacoepi, pharmacogenomics and drug safety: early results and a plan for analysis of UK biobank data// | ||
+ | * January 6, 2021: //2021 Methods Research Agenda (East)//. [[https://drive.google.com/file/d/1xEV9m97tHW57piMdNjVLEtj70M0kskEe/view?usp=sharing|Recording]] and {{ :projects:workgroups:wg_research_agenda_brainstorm.pptx |Slides}} | ||
+ | * January 7, 2021: //2021 Methods Research Agenda (West)//. [[https://drive.google.com/file/d/1US25jhUxGe1ouOAS4yBfkASHqRpTpmNE/view?usp=sharing|Recording]] and {{ :projects:workgroups:wg_research_agenda_brainstorm.pptx |Slides}} | ||
+ | * February 3, 2021: //2021 Methods Research Agenda (East)//. [[https://drive.google.com/file/d/1faZgdGB1LmD-yrf7hA7FjtDIdLl0gBcL/view?usp=sharing|Recording]] | ||
+ | * February 4, 2021: //2021 Methods Research Agenda (West)//. [[https://drive.google.com/file/d/142KHzyYzrz-pfxOwBKFp6OFU00WLicev/view?usp=sharing|Recording]] | ||
+ | * July 1, 2021: //Empirical calibration//. [[https://drive.google.com/file/d/1ADKFq_aL5CN4iTUiBkrpSv6h6WTEpPuK/view?usp=sharing|Recording]] | ||
+ | * July 7, 2021: //Empirical calibration and Positive Control Imputation//. [[https://drive.google.com/file/d/1bkeuq5ABFMQOyn4cyavQsCLV9tPPjog1/view?usp=sharing|Recording]] | ||
+ | * August 5, 2021: //Large-scale prediction model evaluation//. [[https://drive.google.com/file/d/16oQCP2HgkpPnSvkXZINBsMZfA15epJhQ/view?usp=sharing|Recording]] | ||
+ | ~~NOTOC~~ | ||
- | </WRAP> | ||
- | |||
- | ==== Meetings ==== | ||
- | |||
- | Because of time differences we have separate meetings for the Eastern (Asia-Pacific) and Western (Europe + Americas) hemispheres. | ||
- | |||
- | === Eastern hemisphere === | ||
- | |||
- | Meetings are held every two weeks. Next meeting: | ||
- | |||
- | * April 18, 2017 | ||
- | |||
- | Meetings will take place at these times (DST where appropriate): | ||
- | |||
- | * 4:30pm Adelaide | ||
- | * 4pm South Korea | ||
- | * 3pm Hong Kong / Taiwan | ||
- | * 9am Central European time | ||
- | * 8am UK time | ||
- | |||
- | WebEx details: | ||
- | |||
- | URL: https://meetings.webex.com/collabs/meetings/join?uuid=M6WE9AOKFETH2VEFPVCZWWBIT0-D1JL | ||
- | |||
- | === Western hemisphere === | ||
- | |||
- | Meetings are held every two weeks. Next meeting: | ||
- | |||
- | * April 12, 2018 | ||
- | |||
- | Meetings will take place at these times (DST where appropriate): | ||
- | |||
- | * 5pm Central European time | ||
- | * 4pm UK time | ||
- | * 12pm (noon) New York / New Jersey / Pennsylvania | ||
- | * 9am Los Angeles / Stanford | ||
- | |||
- | WebEx details: | ||
- | |||
- | URL: https://meetings.webex.com/collabs/#/meetings/detail?uuid=M3T9BZV9RSB6YNDM8WDDZMI19D-D1JL |