documentation:software:atlas:achilles_v_1_5
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documentation:software:atlas:achilles_v_1_5 [2017/10/12 02:38] anthonysena [TL;DR] |
documentation:software:atlas:achilles_v_1_5 [2018/03/12 14:36] (current) anthonysena [Concept Hierarchy] |
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| Achilles will now construct a new table in the results schema labeled ''concept_hierarchy'' using the OMOP vocabulary found in the CDM. This one-time operation is used to optimize query performance when by WebAPI against the ''ACHILLES_results'' table. | Achilles will now construct a new table in the results schema labeled ''concept_hierarchy'' using the OMOP vocabulary found in the CDM. This one-time operation is used to optimize query performance when by WebAPI against the ''ACHILLES_results'' table. | ||
| + | **Please Note**: If you update the vocabulary in your CDM, you should re-create (and re-index) the concept_hierarchy table. | ||
| ==== Creating the Concept Hierarchy ==== | ==== Creating the Concept Hierarchy ==== | ||
| Line 71: | Line 72: | ||
| resultsDatabaseSchema <- "my_results_schema_goes_here" | resultsDatabaseSchema <- "my_results_schema_goes_here" | ||
| vocabDatabaseSchema <- "my_vocabulary_schema_goes_here" | vocabDatabaseSchema <- "my_vocabulary_schema_goes_here" | ||
| + | db <- "my_cdm_database_name" | ||
| achillesResults <- Achilles::achilles(connectionDetails, | achillesResults <- Achilles::achilles(connectionDetails, | ||
| cdmDatabaseSchema = cdmDatabaseSchema, | cdmDatabaseSchema = cdmDatabaseSchema, | ||
| Line 101: | Line 103: | ||
| resultsDatabaseSchema <- "my_results_schema_goes_here" | resultsDatabaseSchema <- "my_results_schema_goes_here" | ||
| vocabDatabaseSchema <- "my_vocabulary_schema_goes_here" | vocabDatabaseSchema <- "my_vocabulary_schema_goes_here" | ||
| + | db <- "my_cdm_database_name" | ||
| achillesResults <- Achilles::achilles(connectionDetails, | achillesResults <- Achilles::achilles(connectionDetails, | ||
| cdmDatabaseSchema = cdmDatabaseSchema, | cdmDatabaseSchema = cdmDatabaseSchema, | ||
documentation/software/atlas/achilles_v_1_5.1507775901.txt.gz ยท Last modified: 2017/10/12 02:38 by anthonysena
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