User Tools

Site Tools


documentation:oncology:proposals

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
documentation:oncology:proposals [2018/07/10 22:30]
rimma_belenkaya
documentation:oncology:proposals [2019/01/29 18:22]
rimma_belenkaya
Line 1: Line 1:
-**Oncology Data Representation Challenges**+**PROJECT PLANNING**
  
-{{:​documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx|Report to NCI}}+  * {{:​documentation:​oncology:​oncology_workgroup_project_plan_2018-04-20.xlsxProject Plan}} 
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​issues | Current Task List}}
  
 +**ACCEPTED PROPOSALS**
  
-**Project plan**+{{https://​github.com/​OHDSI/​CommonDataModel/​files/​2589698/​Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} 
 +  - {{ :​documentation:​oncology:​oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "​Oncology Extension Summary"​ (Power Point presentation)}} 
 +  - {{ :​documentation:​oncology:​oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "​Oncology Extension Detailed"​ (Word document)}}
  
-{{:documentation:​oncology:​oncology_workgroup_project_plan_2018-04-20.xlsx|}}+**ETL INSTRUCTIONS** 
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​wiki/​ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} 
 +  * //​{{https://​github.com/​OHDSI/​OncologyWG/​wiki/​ETL-Instructions-for-Mapping-NAACCR-Treatment-Data-into-the-OMOP-CDM ​ETL Instructions for Mapping NAACCR Treatment Data into the OMOP-CDM}} - in progress//
  
-{{https://docs.google.com/spreadsheets/d/14Gmkypv15scPma-FmyDsxN3CDiRokAj7KaZk_-94xj0/edit#gid=0|Detailed Vocab Tasks}}+**ACTIVE WORK DOCUMENTS** 
 +  * //{{https://github.com/OHDSI/OncologyWG/issues/​6#​issuecomment-448066877| Ingestion of NAACCR into the OMOP vocabulary}} ​in progress/
 +  * //​{{https://​github.com/​OHDSI/​OncologyWG/​issues/​25Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress//
  
-**Diagnoses**+**PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS** 
 +  * {{ :​documentation:​oncology:​oncology_cdm_proposal_part_i_2018-12-02.pptx | OHDSI CDM Wokgroup, Dec 2018: "​Oncology Extension Presentation"​}} 
 +  * {{ :​documentation:​oncology:​amia_2018_s77_panel.pptx | AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"​}} 
 +  * {{ :​documentation:​oncology:​ohdsi_2018_european_symposium_poster.pdf | OHDSI 2018 European Symposium: poster "​Improvement of cancer diagnosis representation in OMOP CDM" }} 
 +  * {{ :​documentation:​oncology:​ohdsi_2018_symposium_poster.pdf | OHDSI 2018 Symposium: poster "​SNOMED Extensions"​}} 
 +  * {{ :​documentation:​oncology:​state_of_collaborative_address_-_rimma_belenkaya.pptx | 2018 OHDSI State of Collaborative:​ presentation}} 
 +  * {{:​documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx| 2017 Report to NCI: "​Oncology Data Representation Challenges"​}}  ​
  
-  * **[[https://​github.com/​OHDSI/​CommonDataModel/​issues/​199|Cancer Diagnosis Representation Proposal]]** 
- 
-  * **{{:​documentation:​oncology:​etl_instructions_for_icd-o_code_mappings.docx|ETL Instructions for ICD-O to SNOMED ​ 
-mapping}}** 
- 
-  * **{{:​documentation:​oncology:​poster2018-improvement_of_cancer_diagnosis_representation_in_omop_cdm3_1_.pdf|Europen Symposium Poster}}** 
- 
-Misc diagnosis documents 
-  *[[https://​docs.google.com/​document/​d/​1ADxqvjO4MxoYoEd9aJPZOswSKAPvf4YOEjj0gWnwqfA/​edit?​usp=sharing|Cancer Diagnosis Proposal, version 1]] 
-  *{{:​documentation:​oncology:​cancer_diagnostic_features_2018-02-07.pptx|Cancer Diagnostic Features proposal, version 1}} 
-  *{{https://​docs.google.com/​forms/​d/​1IvOY_IsdcRigLec80r9IvkaakyhBzr1mccniTaKGJKs/​edit?​c=0&​w=1#​responses|Cancer Diagnostic Features Proposal Voting Results}} 
-  * {{:​documentation:​oncology:​nci_meta_exploration_results.docx|Exploration of ICD-O - NCI Thesaurus queries}} 
-  * {{:​documentation:​oncology:​nci_mapping.pptx|Exploration of ICD-O - NCI Results}} 
-  * {{:​documentation:​oncology:​icd-o_and_snomed.pdf|ICD-O to SMOMED mappings}} 
-  * {{:​documentation:​oncology:​icdo_histology_topography.xlsx|SEER Histology/​Topography List Parsed}} 
- 
- 
-** Treatments ** 
- 
-  * **[[https://​github.com/​OHDSI/​CommonDataModel/​issues/​163|Treatment Proposal]]** 
- 
-  * **{{:​documentation:​oncology:​ohdsi_oncology_treatment_model_comparison_a_vs_b.xlsx|Option A vs B: use cases, pros and cons}}** 
- 
-  * **[[https://​goo.gl/​forms/​glPafySnu6kPhMxf2|Vote]]** 
- 
-  * [[https://​docs.google.com/​document/​d/​1_nPrTriYdsFa6jKCI70oqPeHTyw-WAsafCAUdmm869Q/​edit|Feedback]] 
- 
-  * [[http://​forums.ohdsi.org/​t/​oncology-treatment-proposal/​4050|Forums]] 
- 
- 
-Misc treatment documents 
- 
-  * {{:​documentation:​oncology:​ohdsi_oncology_wg_drug_research_djo_0724.pdf|Exploration of NCI oncology drug mappings to OHDSI vocabulary}} 
-  * {{:​documentation:​oncology:​nci_ohdsi_drug_matches_all_0725.xlsx|Current mappings of NCI oncology drugs to OHDSI vocabulary}} 
- 
-  * [[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=cancer_treatment:​chemotherapy| Cancer Chemotherapy Drugs]] 
- 
-  * {{:​documentation:​oncology:​surgical_treatment_overview_2017-07-25.pptx| Surgical treatment ovreview}} 
- 
- 
- 
-**Genomic CDM (G-CDM) Proposal** ​ 
- 
-[[https://​drive.google.com/​open?​id=0B3kgLeD4hvJ6aWdIQkEzRXRmajQ|G-CDM specification]] 
-(Seng Chan You <​applegna@gmail.com>​) 
- 
- 
-**Face to Face Proceedings** 
- 
-[[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​oncology:​meeting_notes_2017_oct-19|Notes and Next Steps]] 
  
 +**[[documentation:​oncology:​archive|Archive]]**
  
  
documentation/oncology/proposals.txt · Last modified: 2019/12/06 21:42 by sratwani