User Tools

Site Tools


documentation:oncology:proposals

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
documentation:oncology:proposals [2018/05/14 14:18]
rimma_belenkaya
documentation:oncology:proposals [2019/12/06 21:42] (current)
sratwani
Line 1: Line 1:
-**Oncology Data Representation Challenges**+** Documentation Planning ​** 
 +  * {{ :​documentation:​oncology:​Oncology_Documentation_Scope.docx | Oncology Documentation Scope (Word document)}}
  
-{{:​documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx|Report to NCI}}+**PROJECT PLANNING**
  
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​issues | Current Task List}}
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​wiki/​Cancer-registry-uses-cases | List of Use Cases}}
  
-**Project plan**+**ONCOLOGY WG PRODUCTS**
  
-{{:​documentation:​oncology:​oncology_workgroup_project_plan_2018-04-20.xlsx|}}+ ​__OMOP CDM Oncology Module__
  
-**Diagnoses**+  ​{{https://​github.com/​OHDSI/​CommonDataModel/​files/​2589698/​Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} 
 +  ​{{ :​documentation:​oncology:​oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "​Oncology Extension Summary"​ (Power Point presentation)}} 
 +  ​{{ :​documentation:​oncology:​oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "​Oncology Extension Detailed"​ (Word document)}}
  
-  * **[[https://​docs.google.com/​document/​d/​1ADxqvjO4MxoYoEd9aJPZOswSKAPvf4YOEjj0gWnwqfA/​edit?​usp=sharing|Cancer Diagnosis Representation Proposal]]**+__OMOP CDM Extension Implementing Oncology Module__
  
-  ​* **{{:documentation:​oncology:​etl_instructions_for_icd-o_code_mappings.docx|ETL Instructions ​for ICD-O to SNOMED mapping}}**+  * {{https://github.com/​OHDSI/​OncologyWG/​tree/​master/​ddl|DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}}
  
-  * **{{:​documentation:​oncology:​cancer_diagnostic_features_2018-02-07.pptx|Cancer Diagnostic Features proposal}}** 
  
-  * **{{https://docs.google.com/forms/d/1IvOY_IsdcRigLec80r9IvkaakyhBzr1mccniTaKGJKs/edit?c=0&w=1#responses|Cancer Diagnostic Features Proposal Voting Results}}**+__ETL Instructions for converting Tumor Registry Data to OMOP__ 
 +  ​* {{https://github.com/​OHDSI/​OncologyWG/​blob/​master/​documentation/​NAACCR - OMOP Diagnosis Crosswalk.pdf|Crosswalk from Tumor Registry to OMOP}} 
 +  * {{https://​github.com/OHDSI/OncologyWG/blob/master/​documentation/​NAACCR%20ETL%20Steps.docx?raw=true|High Level ETL Steps}} 
 +  ​{{https://​github.com/​OHDSI/​OncologyWG/​wiki/​ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} 
 +  ​*{{https://​github.com/​OHDSI/​OncologyWG/​blob/​master/​documentation/​NAACCR.Ingestion.into.OMOP.Vocabulary.-.Diagnostic.Modifiers.docx|ETL of NAACCR diagnosis and diagnostic modifiers}} 
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​issues/​6| Ingestion of NAACCR into the OMOP vocabulary 
 +}}
  
-  * **{{:​documentation:​oncology:​poster2018-improvement_of_cancer_diagnosis_representation_in_omop_cdm3_1_.pdf|Europen Symposium Poster}}** 
  
-Misc diagnosis documents 
-  * {{:​documentation:​oncology:​nci_meta_exploration_results.docx|Exploration of ICD-O - NCI Thesaurus queries}} 
-  * {{:​documentation:​oncology:​nci_mapping.pptx|Exploration of ICD-O - NCI Results}} 
  
-  ​{{:​documentation:​oncology:​icd-o_and_snomed.pdf|ICD-O to SMOMED mappings}}+** WORK IN-PROGRESS **
  
-  * {{:documentation:​oncology:​icdo_histology_topography.xlsx|SEER Histology/Topography List Parsed}}+  * {{https://github.com/OHDSI/​OncologyWG/​issues/​25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress
  
 +**PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS**
  
-** Treatments ​**+  ​{{https://​www.ohdsi.org/​2019-us-symposium-showcase-27/​ | OMOP CDM Oncology Module at Work }} 
 +  ​{{https://​www.ohdsi.org/​2019-us-symposium-showcase-11/​|HemOnc:​ A New Standard Vocabulary for Oncology Drug Regimen Representation in the OMOP Common Data Model}} 
 +  ​{{https://​www.ohdsi.org/​2019-us-symposium-showcase-12/​ | Conversion of Diagnosis and Chemotherapy Data in Electronic Health Records to Episode-based Oncology Extension of OMOP-CDM }} 
 +  ​{{https://​www.ncbi.nlm.nih.gov/​pubmed/​31238109 | HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model}} 
 +  * {{https://​www.ncbi.nlm.nih.gov/​pubmed/​31438365 |Standardized Observational Cancer Research Using the OMOP CDM Oncology Module}} 
 +  *{{https://​www.ohdsi.org/​web/​wiki/​lib/​exe/​fetch.php?​media=documentation:​oncology:​amia_2018_s77_panel.pptx|AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"​}}
  
-  * **[[https://github.com/OHDSI/CommonDataModel/issues/163|Treatment Proposal]]**+  *{{https://www.ohdsi.org/web/wiki/lib/exe/​fetch.php?​media=documentation:​oncology:​ohdsi_2018_european_symposium_poster.pdf|OHDSI 2018 European Symposium: poster "​Improvement of cancer diagnosis representation in OMOP CDM"}}
  
-  ​* **{{:​documentation:​oncology:​ohdsi_oncology_treatment_model_comparison_a_vs_b.xlsx|Option A vs Buse cases, pros and cons}}**+  *{{https://​www.ohdsi.org/​web/​wiki/​lib/​exe/​fetch.php?​media=documentation:​oncology:​ohdsi_2018_symposium_poster.pdf|OHDSI 2018 Symposiumposter "​SNOMED Extensions"​}}
  
-  * **[[https://goo.gl/forms/glPafySnu6kPhMxf2|Vote]]**+  *{{https://www.ohdsi.org/web/wiki/​lib/​exe/​fetch.php?​media=documentation:​oncology:​state_of_collaborative_address_-_rimma_belenkaya.pptx|2018 OHDSI State of Collaborative:​ presentation}} 
 +  ​*{{https://​www.ohdsi.org/​web/​wiki/​lib/​exe/​fetch.php?​media=documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx|2017 Report to NCI: "​Oncology Data Representation Challenges"​}}
  
-  * [[https://​docs.google.com/​document/​d/​1_nPrTriYdsFa6jKCI70oqPeHTyw-WAsafCAUdmm869Q/​edit|Feedback]] 
  
-  * [[http://​forums.ohdsi.org/​t/​oncology-treatment-proposal/​4050|Forums]] 
  
 +**[[documentation:​oncology:​archive|References and Archive]]**
  
-Misc treatment documents +  ​* {{ :​documentation:​oncology:​2019-12-06_08.59.29_oncology_wg_-_genomic_subgroup_meeting_412862164.zip | Genomic ​Recording ​(zip)}}
- +
-  ​* {{:​documentation:​oncology:​ohdsi_oncology_wg_drug_research_djo_0724.pdf|Exploration of NCI oncology drug mappings to OHDSI vocabulary}} +
-  * {{:​documentation:​oncology:​nci_ohdsi_drug_matches_all_0725.xlsx|Current mappings of NCI oncology drugs to OHDSI vocabulary}} +
- +
-  * [[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=cancer_treatment:​chemotherapy| Cancer Chemotherapy Drugs]] +
- +
-  * {{:​documentation:​oncology:​surgical_treatment_overview_2017-07-25.pptxSurgical treatment ovreview}} +
- +
- +
- +
-**Genomic ​CDM (G-CDMProposal**  +
- +
-[[https://​drive.google.com/​open?​id=0B3kgLeD4hvJ6aWdIQkEzRXRmajQ|G-CDM specification]] +
-(Seng Chan You <​applegna@gmail.com>​) +
- +
- +
-**Face to Face Proceedings** +
- +
-[[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​oncology:​meeting_notes_2017_oct-19|Notes and Next Steps]] +
  
  
documentation/oncology/proposals.1526307516.txt.gz · Last modified: 2018/05/14 14:18 by rimma_belenkaya