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documentation:oncology:proposals [2018/05/14 14:18]
rimma_belenkaya
documentation:oncology:proposals [2019/01/17 01:40] (current)
rimma_belenkaya
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-**Oncology Data Representation Challenges**+**PROJECT PLANNING**
  
-{{:​documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx|Report to NCI}}+  * {{:​documentation:​oncology:​oncology_workgroup_project_plan_2018-04-20.xlsxProject Plan}} 
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​issues | Current Task List}}
  
 +**ACCEPTED PROPOSALS**
  
-**Project plan**+{{https://​github.com/​OHDSI/​CommonDataModel/​files/​2589698/​Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} 
 +  - {{ :​documentation:​oncology:​oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "​Oncology Extension Summary"​ (Power Point presentation)}} 
 +  - {{ :​documentation:​oncology:​oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "​Oncology Extension Detailed"​ (Word document)}}
  
-{{:documentation:​oncology:​oncology_workgroup_project_plan_2018-04-20.xlsx|}}+**ETL INSTRUCTIONS** 
 +  * {{https://​github.com/​OHDSI/​OncologyWG/​wiki/​ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} 
 +  * //​{{https://​github.com/​OHDSI/​OncologyWG/​wiki/​ETL-Instructions-for-Mapping-NAACCR-Treatment-Data-into-the-OMOP-CDM ​ETL Instructions for Mapping NAACCR Treatment Data into the OMOP-CDM}} - in progress//
  
-**Diagnoses**+**ACTIVE WORK DOCUMENTS** 
 +  * //​{{https://​github.com/​OHDSI/​OncologyWG/​issues/​6#​issuecomment-448066877| Ingestion of NAACCR into the OMOP vocabulary}} - in progress//
  
-  ​* **[[https://docs.google.com/​document/​d/​1ADxqvjO4MxoYoEd9aJPZOswSKAPvf4YOEjj0gWnwqfA/​edit?​usp=sharing|Cancer ​Diagnosis Representation Proposal]]**+**PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS*
 +  * {{ :documentation:​oncology:​oncology_cdm_proposal_part_i_2018-12-02.pptx | OHDSI CDM Wokgroup, Dec 2018: "​Oncology Extension Presentation"​}} 
 +  * {{ :​documentation:​oncology:​amia_2018_s77_panel.pptx AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"​}} 
 +  ​{{ :​documentation:​oncology:​ohdsi_2018_european_symposium_poster.pdf | OHDSI 2018 European Symposium: poster "​Improvement of cancer diagnosis representation in OMOP CDM" }} 
 +  ​{{ :​documentation:​oncology:​ohdsi_2018_symposium_poster.pdf | OHDSI 2018 Symposium: poster "​SNOMED Extensions"​}} 
 +  * {{ :​documentation:​oncology:​state_of_collaborative_address_-_rimma_belenkaya.pptx | 2018 OHDSI State of Collaborative:​ presentation}} 
 +  * {{:​documentation:​oncology:​oncology_data_standardization_challenges_2017-11-17.docx| 2017 Report to NCI: "​Oncology Data Representation Challenges"​}}  ​
  
-  * **{{:​documentation:​oncology:​etl_instructions_for_icd-o_code_mappings.docx|ETL Instructions for ICD-O to SNOMED mapping}}** 
- 
-  * **{{:​documentation:​oncology:​cancer_diagnostic_features_2018-02-07.pptx|Cancer Diagnostic Features proposal}}** 
- 
-  * **{{https://​docs.google.com/​forms/​d/​1IvOY_IsdcRigLec80r9IvkaakyhBzr1mccniTaKGJKs/​edit?​c=0&​w=1#​responses|Cancer Diagnostic Features Proposal Voting Results}}** 
- 
-  * **{{:​documentation:​oncology:​poster2018-improvement_of_cancer_diagnosis_representation_in_omop_cdm3_1_.pdf|Europen Symposium Poster}}** 
- 
-Misc diagnosis documents 
-  * {{:​documentation:​oncology:​nci_meta_exploration_results.docx|Exploration of ICD-O - NCI Thesaurus queries}} 
-  * {{:​documentation:​oncology:​nci_mapping.pptx|Exploration of ICD-O - NCI Results}} 
- 
-  * {{:​documentation:​oncology:​icd-o_and_snomed.pdf|ICD-O to SMOMED mappings}} 
- 
-  * {{:​documentation:​oncology:​icdo_histology_topography.xlsx|SEER Histology/​Topography List Parsed}} 
- 
- 
-** Treatments ** 
- 
-  * **[[https://​github.com/​OHDSI/​CommonDataModel/​issues/​163|Treatment Proposal]]** 
- 
-  * **{{:​documentation:​oncology:​ohdsi_oncology_treatment_model_comparison_a_vs_b.xlsx|Option A vs B: use cases, pros and cons}}** 
- 
-  * **[[https://​goo.gl/​forms/​glPafySnu6kPhMxf2|Vote]]** 
- 
-  * [[https://​docs.google.com/​document/​d/​1_nPrTriYdsFa6jKCI70oqPeHTyw-WAsafCAUdmm869Q/​edit|Feedback]] 
- 
-  * [[http://​forums.ohdsi.org/​t/​oncology-treatment-proposal/​4050|Forums]] 
- 
- 
-Misc treatment documents 
- 
-  * {{:​documentation:​oncology:​ohdsi_oncology_wg_drug_research_djo_0724.pdf|Exploration of NCI oncology drug mappings to OHDSI vocabulary}} 
-  * {{:​documentation:​oncology:​nci_ohdsi_drug_matches_all_0725.xlsx|Current mappings of NCI oncology drugs to OHDSI vocabulary}} 
- 
-  * [[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=cancer_treatment:​chemotherapy| Cancer Chemotherapy Drugs]] 
- 
-  * {{:​documentation:​oncology:​surgical_treatment_overview_2017-07-25.pptx| Surgical treatment ovreview}} 
- 
- 
- 
-**Genomic CDM (G-CDM) Proposal** ​ 
- 
-[[https://​drive.google.com/​open?​id=0B3kgLeD4hvJ6aWdIQkEzRXRmajQ|G-CDM specification]] 
-(Seng Chan You <​applegna@gmail.com>​) 
- 
- 
-**Face to Face Proceedings** 
- 
-[[http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​oncology:​meeting_notes_2017_oct-19|Notes and Next Steps]] 
  
 +**[[documentation:​oncology:​archive|Archive]]**
  
  
documentation/oncology/proposals.1526307516.txt.gz · Last modified: 2018/05/14 14:18 by rimma_belenkaya