documentation:oncology:proposals
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documentation:oncology:proposals [2018/07/10 22:30] rimma_belenkaya |
documentation:oncology:proposals [2019/12/06 21:42] (current) sratwani |
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| - | **Oncology Data Representation Challenges** | + | ** Documentation Planning ** |
| + | * {{ :documentation:oncology:Oncology_Documentation_Scope.docx | Oncology Documentation Scope (Word document)}} | ||
| - | {{:documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx|Report to NCI}} | + | **PROJECT PLANNING** |
| + | * {{https://github.com/OHDSI/OncologyWG/issues | Current Task List}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/wiki/Cancer-registry-uses-cases | List of Use Cases}} | ||
| - | **Project plan** | + | **ONCOLOGY WG PRODUCTS** |
| - | {{:documentation:oncology:oncology_workgroup_project_plan_2018-04-20.xlsx|}} | + | __OMOP CDM Oncology Module__ |
| - | {{https://docs.google.com/spreadsheets/d/14Gmkypv15scPma-FmyDsxN3CDiRokAj7KaZk_-94xj0/edit#gid=0|Detailed Vocab Tasks}} | + | * {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} |
| + | * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}} | ||
| + | * {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}} | ||
| - | **Diagnoses** | + | __OMOP CDM Extension Implementing Oncology Module__ |
| - | * **[[https://github.com/OHDSI/CommonDataModel/issues/199|Cancer Diagnosis Representation Proposal]]** | + | * {{https://github.com/OHDSI/OncologyWG/tree/master/ddl|DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}} |
| - | * **{{:documentation:oncology:etl_instructions_for_icd-o_code_mappings.docx|ETL Instructions for ICD-O to SNOMED | ||
| - | mapping}}** | ||
| - | * **{{:documentation:oncology:poster2018-improvement_of_cancer_diagnosis_representation_in_omop_cdm3_1_.pdf|Europen Symposium Poster}}** | + | __ETL Instructions for converting Tumor Registry Data to OMOP__ |
| + | * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR - OMOP Diagnosis Crosswalk.pdf|Crosswalk from Tumor Registry to OMOP}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR%20ETL%20Steps.docx?raw=true|High Level ETL Steps}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} | ||
| + | *{{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR.Ingestion.into.OMOP.Vocabulary.-.Diagnostic.Modifiers.docx|ETL of NAACCR diagnosis and diagnostic modifiers}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/issues/6| Ingestion of NAACCR into the OMOP vocabulary | ||
| + | }} | ||
| - | Misc diagnosis documents | ||
| - | *[[https://docs.google.com/document/d/1ADxqvjO4MxoYoEd9aJPZOswSKAPvf4YOEjj0gWnwqfA/edit?usp=sharing|Cancer Diagnosis Proposal, version 1]] | ||
| - | *{{:documentation:oncology:cancer_diagnostic_features_2018-02-07.pptx|Cancer Diagnostic Features proposal, version 1}} | ||
| - | *{{https://docs.google.com/forms/d/1IvOY_IsdcRigLec80r9IvkaakyhBzr1mccniTaKGJKs/edit?c=0&w=1#responses|Cancer Diagnostic Features Proposal Voting Results}} | ||
| - | * {{:documentation:oncology:nci_meta_exploration_results.docx|Exploration of ICD-O - NCI Thesaurus queries}} | ||
| - | * {{:documentation:oncology:nci_mapping.pptx|Exploration of ICD-O - NCI Results}} | ||
| - | * {{:documentation:oncology:icd-o_and_snomed.pdf|ICD-O to SMOMED mappings}} | ||
| - | * {{:documentation:oncology:icdo_histology_topography.xlsx|SEER Histology/Topography List Parsed}} | ||
| - | ** Treatments ** | + | ** WORK IN-PROGRESS ** |
| - | * **[[https://github.com/OHDSI/CommonDataModel/issues/163|Treatment Proposal]]** | + | * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress |
| - | * **{{:documentation:oncology:ohdsi_oncology_treatment_model_comparison_a_vs_b.xlsx|Option A vs B: use cases, pros and cons}}** | + | **PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS** |
| - | * **[[https://goo.gl/forms/glPafySnu6kPhMxf2|Vote]]** | + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-27/ | OMOP CDM Oncology Module at Work }} |
| + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-11/|HemOnc: A New Standard Vocabulary for Oncology Drug Regimen Representation in the OMOP Common Data Model}} | ||
| + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-12/ | Conversion of Diagnosis and Chemotherapy Data in Electronic Health Records to Episode-based Oncology Extension of OMOP-CDM }} | ||
| + | * {{https://www.ncbi.nlm.nih.gov/pubmed/31238109 | HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model}} | ||
| + | * {{https://www.ncbi.nlm.nih.gov/pubmed/31438365 |Standardized Observational Cancer Research Using the OMOP CDM Oncology Module}} | ||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:amia_2018_s77_panel.pptx|AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}} | ||
| - | * [[https://docs.google.com/document/d/1_nPrTriYdsFa6jKCI70oqPeHTyw-WAsafCAUdmm869Q/edit|Feedback]] | + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_european_symposium_poster.pdf|OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM"}} |
| - | * [[http://forums.ohdsi.org/t/oncology-treatment-proposal/4050|Forums]] | + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_symposium_poster.pdf|OHDSI 2018 Symposium: poster "SNOMED Extensions"}} |
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx|2018 OHDSI State of Collaborative: presentation}} | ||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx|2017 Report to NCI: "Oncology Data Representation Challenges"}} | ||
| - | Misc treatment documents | ||
| - | * {{:documentation:oncology:ohdsi_oncology_wg_drug_research_djo_0724.pdf|Exploration of NCI oncology drug mappings to OHDSI vocabulary}} | ||
| - | * {{:documentation:oncology:nci_ohdsi_drug_matches_all_0725.xlsx|Current mappings of NCI oncology drugs to OHDSI vocabulary}} | ||
| - | * [[http://www.ohdsi.org/web/wiki/doku.php?id=cancer_treatment:chemotherapy| Cancer Chemotherapy Drugs]] | + | **[[documentation:oncology:archive|References and Archive]]** |
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| - | * {{:documentation:oncology:surgical_treatment_overview_2017-07-25.pptx| Surgical treatment ovreview}} | + | |
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| - | **Genomic CDM (G-CDM) Proposal** | + | |
| - | + | ||
| - | [[https://drive.google.com/open?id=0B3kgLeD4hvJ6aWdIQkEzRXRmajQ|G-CDM specification]] | + | |
| - | (Seng Chan You <applegna@gmail.com>) | + | |
| - | + | ||
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| - | **Face to Face Proceedings** | + | |
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| - | [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:oncology:meeting_notes_2017_oct-19|Notes and Next Steps]] | + | |
| + | * {{ :documentation:oncology:2019-12-06_08.59.29_oncology_wg_-_genomic_subgroup_meeting_412862164.zip | Genomic Recording (zip)}} | ||
documentation/oncology/proposals.1531261843.txt.gz · Last modified: 2018/07/10 22:30 by rimma_belenkaya
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