Observational Health Data Sciences and Informatics

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===== OMOP Standardized Vocabulary V5.0 =====

Thank you for visiting the Vocabulary wiki! All documentation for the vocabulary has now moved to the[[https://github.com/OHDSI/Vocabulary-v5.0/wiki|OHDSI GitHub wiki]]. Come join us over there! 

The below is outdated information and will be removed at a later time






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===== Standardized Vocabularies =====

  * [[documentation:vocabulary:Introduction]]
    * [[documentation:vocabulary:Background]]
    * [[documentation:vocabulary:Principles]]
    * [[documentation:vocabulary:Definitions of Terms]]
    * [[documentation:vocabulary:Changes from Version 4]]
  * [[documentation:vocabulary:General Structure and Use]]
    * [[documentation:vocabulary:Availability, License, Download]]
    * [[documentation:vocabulary:Domains and Vocabularies]]
    * [[documentation:vocabulary:Standard, Classification and Source Concepts]]
    * [[documentation:vocabulary:Mapping]]
    * [[documentation:vocabulary:Data ETL]]
  * [[documentation:vocabulary:Vocabulary statistics]]
  * [[documentation:vocabulary:Domains]]
    * [[documentation:vocabulary:condition|Condition]]
    * [[documentation:vocabulary:currency|Currency]]
    * [[documentation:vocabulary:device|Device]]
    * [[documentation:vocabulary:drug|Drug]]
    * [[documentation:vocabulary:ethnicity|Ethnicity]]
    * [[documentation:vocabulary:gender|Gender]]
    * [[documentation:vocabulary:measurement|Measurement]]
    * [[documentation:vocabulary:meas_value|Measurement Value]]
    * [[documentation:vocabulary:meas_value_operator|Measurement Value Operator]]
    * [[documentation:vocabulary:metadata|Metadata]]
    * [[documentation:vocabulary:modifier|Modifier]]
    * [[documentation:vocabulary:observation|Observation]]
    * [[documentation:vocabulary:place_of_service|Place of Service]]
    * [[documentation:vocabulary:procedure|Procedure]]
    * [[documentation:vocabulary:provider_specialty|Provider Specialty]]
    * [[documentation:vocabulary:race|Race]]
    * [[documentation:vocabulary:relationship|Relationship]]
    * [[documentation:vocabulary:revenue_code|Revenue Code]]
    * [[documentation:vocabulary:route|Route Of Administration]]
    * [[documentation:vocabulary:specimen|Specimen]]
    * [[documentation:vocabulary:spec_anatomic_site|Specimen Anatomic Site]]
    * [[documentation:vocabulary:spec_disease_status|Specimen Disease Status]]
    * [[documentation:vocabulary:type_concept|Type Concept]]
    * [[documentation:vocabulary:unit|Unit]]
    * [[documentation:vocabulary:visit|Visit]]
    * [[documentation:vocabulary:combination_domains|Combination Domains]]
  * [[documentation:vocabulary:Vocabularies]] All vocabularies listed exist in the OHDSI vocabulary at Athena. For some of them, the documentation is not yet provided (in red)

^ Name                  ^ Description ^
| [[documentation:vocabulary:abms|ABMS]] | Provider Specialty (American Board of Medical Specialties)                                               |
| [[documentation:vocabulary:amt|AMT]] | Australian Medicines Terminology (NEHTA)                                                                 |
| [[documentation:vocabulary:apc|APC]] | Ambulatory Payment Classification (CMS)                                                                  |
| [[documentation:vocabulary:atc|ATC]] | WHO Anatomic Therapeutic Chemical Classification                                                         |
| [[documentation:vocabulary:bdpm|BDPM]] | Public Database of Medications (Social-Sante)                                                            |
| [[documentation:vocabulary:cap|CAP]] | CAP electronic Cancer Checklists (College of American Pathologists)                                      |
| [[documentation:vocabulary:cdt|CDT]] | Current Dental Terminology (ADA)                                                                         |
| CGI                   | Cancer Genome Interpreter (Pompeu Fabra University)                                                      |
| [[documentation:vocabulary:ciel|CIEL]] | Columbia International eHealth Laboratory (Columbia University)                                          |
| [[documentation:vocabulary:cim10|CIM10]] | International Classification of Diseases, Tenth Revision, French Edition                                 |
| CIViC                 | Clinical Interpretation of Variants in Cancer (civicdb.org)                                              |
| ClinVar               | ClinVar (NCBI)                                                                                           |
| [[documentation:vocabulary:cms_place_of_service|CMS Place of Service]] | Place of Service Codes for Professional Claims (CMS)                                                     |
| [[documentation:vocabulary:cohort|Cohort]] | Legacy OMOP HOI or DOI cohort                                                                            |
| [[documentation:vocabulary:cpt4|CPT4]] | Current Procedural Terminology version 4 (AMA)                                                           |
| CTD                   | Comparative Toxicogenomic Database                                                                       |
| [[documentation:vocabulary:currency|Currency]] | International Currency Symbol (ISO 4217)                                                                 |
| [[documentation:vocabulary:cvx|CVX]] | CDC Vaccine Administered CVX (NCIRD)                                                                     |
| [[documentation:vocabulary:da_france|DA_France]] | Disease Analyzer France (IQVIA)                                                                          |
| [[documentation:vocabulary:dm+d|dm+d]] | Dictionary of Medicines and Devices (NHS)                                                                |
| [[documentation:vocabulary:dpd|DPD]] | Drug Product Database (Health Canada)                                                                    |
| [[documentation:vocabulary:drg|DRG]] | Diagnosis-related group (CMS)                                                                            |
| EDI                   | Korean EDI                                                                                               |
| [[documentation:vocabulary:ephmra_atc|EphMRA ATC]] | Anatomical Classification of Pharmaceutical Products (EphMRA)                                            |
| [[documentation:vocabulary:episode|Episode]] | OMOP Episode Type                                                                                        |
| [[documentation:vocabulary:etc|ETC]] | Enhanced Therapeutic Classification (FDB)                                                                |
| [[documentation:vocabulary:ethnicity|Ethnicity]] | OMOP Ethnicity                                                                                           |
| [[documentation:vocabulary:gcn_seqno|GCN_SEQNO]] | Clinical Formulation ID (FDB)                                                                            |
| [[documentation:vocabulary:gemscript|Gemscript]] | Gemscript (Resip)                                                                                        |
| [[documentation:vocabulary:gender|Gender]] | OMOP Gender                                                                                              |
| [[documentation:vocabulary:ggr|GGR]] | Commented Drug Directory (BCFI)                                                                          |
| [[documentation:vocabulary:gpi|GPI]] | Medi-Span Generic Product Identifier (Wolters Kluwer Health)                                             |
| [[documentation:vocabulary:grr|GRR]] | Global Reference Repository (IQVIA)                                                                      |
| [[documentation:vocabulary:hcpcs|HCPCS]] | Healthcare Common Procedure Coding System (CMS)                                                          |
| [[documentation:vocabulary:hemonc|HemOnc]] | HemOnc                                                                                                   |
| [[documentation:vocabulary:hes_specialty|HES Specialty]] | Hospital Episode Statistics Specialty (NHS)                                                              |
| HGNC                  | Human Gene Nomenclature (European Bioinformatics Institute)                                              |
| [[documentation:vocabulary:icd10|ICD10]] | International Classification of Diseases, Tenth Revision (WHO)                                           |
| [[documentation:vocabulary:icd10cm|ICD10CM]] | International Classification of Diseases, Tenth Revision, Clinical Modification (NCHS)                   |
| [[documentation:vocabulary:icd10cn|ICD10CN]] | International Classification of Diseases, Tenth Revision, Chinese Edition                                |
| [[documentation:vocabulary:icd10gm|ICD10GM]] | International Classification of Diseases, Tenth Revision, German Modification (DIMDI)                    |
| [[documentation:vocabulary:icd10pcs|ICD10PCS]] | ICD-10 Procedure Coding System (CMS)                                                                     |
| [[documentation:vocabulary:icd9cm|ICD9CM]] | International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)   |
| [[documentation:vocabulary:icd9proc|ICD9Proc]] | International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 3 (NCHS)         |
| ICD9ProcCN            | International Classification of Diseases, Ninth Revision, Chinese Edition, Procedures                    |
| [[documentation:vocabulary:icdo3|ICDO3]] | International Classification of Diseases for Oncology, Third Edition (WHO)                               |
| [[documentation:vocabulary:indication|Indication]] | Indications and Contraindications (FDB)                                                                  |
| [[documentation:vocabulary:isbt|ISBT]] | Information Standard for Blood and Transplant 128 Product (ICCBBA)                                       |
| [[documentation:vocabulary:isbt_attribute|ISBT Attribute]] | Information Standard for Blood and Transplant 128 Product Attribute (ICCBBA)                             |
| JAX                   | The Clinical Knowledgebase (The Jackson Laboratory)                                                      |
| [[documentation:vocabulary:jmdc|JMDC]] | Japan Medical Data Center Drug Code (JMDC)                                                               |
| KCD7                  | Korean Classification of Diseases, 7th Revision                                                          |
| [[documentation:vocabulary:kdc|KDC]] | Korean Drug Code (HIRA)                                                                                  |	
| KNHIS                 | Korean National Health Information System                                                                |
| [[documentation:vocabulary:loinc|LOINC]] | Logical Observation Identifiers Names and Codes (Regenstrief Institute)                                  |
| [[documentation:vocabulary:lpd_australia|LPD_Australia]] | Longitudinal Patient Data Australia (IQVIA)                                                              |
| [[documentation:vocabulary:lpd_belgium|LPD_Belgium]] | Longitudinal Patient Data Belgium (IQVIA)                                                                |
| [[documentation:vocabulary:mdc|MDC]] | Major Diagnostic Categories (CMS)                                                                        |
| [[documentation:vocabulary:meddra|MedDRA]] | Medical Dictionary for Regulatory Activities (MSSO)                                                      |
| [[documentation:vocabulary:medicare_specialty|Medicare Specialty]] | Medicare provider/supplier specialty codes (CMS)                                                         |
| MEDRT                 | Medication Reference Terminology MED-RT (VA)                                                             |
| [[documentation:vocabulary:mesh|MeSH]] | Medical Subject Headings (NLM)                                                                           |
| [[documentation:vocabulary:mmi|MMI]] | Modernizing Medicine (MMI)                                                                               |
| [[documentation:vocabulary:multilex|Multilex]] | Multilex (FDB)                                                                                           |
| [[documentation:vocabulary:multum|Multum]] | Cerner Multum (Cerner)                                                                                   |
| [[documentation:vocabulary:naaccr|NAACCR]] | Data Standards & Data Dictionary Volume II (NAACCR)                                                      |
| [[documentation:vocabulary:nccd|NCCD]] | Normalized Chinese Clinical Drug                                                                         |
| NCIt                  | NCI Thesaurus (National Cancer Institute)                                                                |
| [[documentation:vocabulary:ndc|NDC]] | National Drug Code (FDA and manufacturers)                                                               |
| [[documentation:vocabulary:ndfrt|NDFRT]] | National Drug File - Reference Terminology (VA)                                                          |
| Nebraska Lexicon      | Nebraska Lexicon                                                                                         |
| [[documentation:vocabulary:nfc|NFC]] | New Form Code (EphMRA)                                                                                   |
| [[documentation:vocabulary:nucc|NUCC]] | National Uniform Claim Committee Health Care Provider Taxonomy Code Set (NUCC)                           |
| OMOP Extension        | OMOP Extension (OHDSI)                                                                                   |
| [[documentation:vocabulary:opcs4|OPCS4]] | OPCS Classification of Interventions and Procedures version 4 (NHS)                                      |
| [[documentation:vocabulary:oxmis|OXMIS]] | Oxford Medical Information System (OCHP)                                                                 |
| [[documentation:vocabulary:pcornet|PCORNet]] | National Patient-Centered Clinical Research Network (PCORI)                                              |
| [[documentation:vocabulary:ppi|PPI]] | AllOfUs_PPI (Columbia)                                                                                   |
| [[documentation:vocabulary:provider|Provider]] | OMOP Provider                                                                                            |
| [[documentation:vocabulary:race|Race]] | Race and Ethnicity Code Set (USBC)                                                                       |
| [[documentation:vocabulary:read|Read]] | NHS UK Read Codes Version 2 (HSCIC)                                                                      |
| [[documentation:vocabulary:revenue_code|Revenue Code]] | UB04/CMS1450 Revenue Codes (CMS)                                                                         |
| [[documentation:vocabulary:rxnorm|RxNorm]] | RxNorm (NLM)                                                                                             |
| [[documentation:international_drugs|RxNorm Extension]] | RxNorm Extension (OHDSI)                                                                                 |
| [[documentation:vocabulary:smq|SMQ]] | Standardised MedDRA Queries (MSSO)                                                                       |
| [[documentation:vocabulary:snomed|SNOMED]] | Systematic Nomenclature of Medicine - Clinical Terms (IHTSDO)                                            |
| [[documentation:vocabulary:snomed_veterinary|SNOMED Veterinary]] | SNOMED Veterinary                                                                                        |
| Specimen Type         | OMOP Specimen Type                                                                                       |
| [[documentation:vocabulary:spl|SPL]] | Structured Product Labeling (FDA)                                                                        |
| [[documentation:vocabulary:supplier|Supplier]] | OMOP Supplier                                                                                            |
| [[documentation:vocabulary:sus|SUS]] | Table of Procedures, Drugs, Orthoses, Protheses and Special Materials (Brazilian Unified Health System)  |
| [[documentation:vocabulary:va_class|VA Class]] | VA National Drug File Class (VA)                                                                         |
| [[documentation:vocabulary:va_product|VA Product]] | VA National Drug File Product (VA)                                                                       |
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