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documentation:oncology:proposals

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documentation:oncology:proposals [2019/10/29 21:32] – sratwanidocumentation:oncology:proposals [2019/12/06 21:42] (current) – sratwani
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 +** Documentation Planning **
 +  * {{ :documentation:oncology:Oncology_Documentation_Scope.docx | Oncology Documentation Scope (Word document)}}
  
 **PROJECT PLANNING** **PROJECT PLANNING**
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 **ONCOLOGY WG PRODUCTS** **ONCOLOGY WG PRODUCTS**
  
- OMOP CDM Oncology Module+ __OMOP CDM Oncology Module__
  
-  - {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} +  * {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} 
-  - {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}} +  * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}} 
-  - {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}}+  * {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}}
  
-*OMOP CDM Extension Implementing Oncology Module*+__OMOP CDM Extension Implementing Oncology Module__
  
-*ETL Instructions for converting Tumor Registry Data to OMOP* +  * {{https://github.com/OHDSI/OncologyWG/tree/master/ddl|DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}}
-  - {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} +
-  - {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-NAACCR-Treatment-Data-into-the-OMOP-CDM | ETL Instructions for Mapping NAACCR Treatment Data into the OMOP-CDM}} - in progress +
-  - {{https://github.com/OHDSI/OncologyWG/tree/master/ddl | DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}}+
  
  
-  * **Work In-Progress** +__ETL Instructions for converting Tumor Registry Data to OMOP__ 
-  * {{https://github.com/OHDSI/OncologyWG/issues/6#issuecomment-448066877| Ingestion of NAACCR into the OMOP vocabulary}} - in progress+  * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR - OMOP Diagnosis Crosswalk.pdf|Crosswalk from Tumor Registry to OMOP}} 
 +  * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR%20ETL%20Steps.docx?raw=true|High Level ETL Steps}} 
 +  * {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} 
 +  *{{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR.Ingestion.into.OMOP.Vocabulary.-.Diagnostic.Modifiers.docx|ETL of NAACCR diagnosis and diagnostic modifiers}} 
 +  * {{https://github.com/OHDSI/OncologyWG/issues/6| Ingestion of NAACCR into the OMOP vocabulary 
 +}} 
 + 
 + 
 + 
 +** WORK IN-PROGRESS ** 
   * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress   * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress
  
 **PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS** **PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS**
-  * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | OHDSI CDM Wokgroup, Dec 2018: "Oncology Extension Presentation"}} + 
-  * {{ :documentation:oncology:amia_2018_s77_panel.pptx | AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}} +  * {{https://www.ohdsi.org/2019-us-symposium-showcase-27/ | OMOP CDM Oncology Module at Work }} 
-  * {{ :documentation:oncology:ohdsi_2018_european_symposium_poster.pdf | OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM" }} +  * {{https://www.ohdsi.org/2019-us-symposium-showcase-11/|HemOnc: A New Standard Vocabulary for Oncology Drug Regimen Representation in the OMOP Common Data Model}} 
-  * {{ :documentation:oncology:ohdsi_2018_symposium_poster.pdf | OHDSI 2018 Symposium: poster "SNOMED Extensions"}} +  * {{https://www.ohdsi.org/2019-us-symposium-showcase-12/ | Conversion of Diagnosis and Chemotherapy Data in Electronic Health Records to Episode-based Oncology Extension of OMOP-CDM }} 
-  * {{ :documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx | 2018 OHDSI State of Collaborative: presentation}} +  * {{https://www.ncbi.nlm.nih.gov/pubmed/31238109 | HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model}} 
-  * {{:documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx| 2017 Report to NCI: "Oncology Data Representation Challenges"}}  +  * {{https://www.ncbi.nlm.nih.gov/pubmed/31438365 |Standardized Observational Cancer Research Using the OMOP CDM Oncology Module}} 
 +  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:amia_2018_s77_panel.pptx|AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}} 
 + 
 +  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_european_symposium_poster.pdf|OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM"}} 
 + 
 +  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_symposium_poster.pdf|OHDSI 2018 Symposium: poster "SNOMED Extensions"}} 
 + 
 +  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx|2018 OHDSI State of Collaborative: presentation}} 
 +  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx|2017 Report to NCI: "Oncology Data Representation Challenges"}} 
  
  
 **[[documentation:oncology:archive|References and Archive]]** **[[documentation:oncology:archive|References and Archive]]**
 +
 +  * {{ :documentation:oncology:2019-12-06_08.59.29_oncology_wg_-_genomic_subgroup_meeting_412862164.zip | Genomic Recording (zip)}}
  
  
documentation/oncology/proposals.1572384761.txt.gz · Last modified: by sratwani
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