Observational Health Data Sciences and Informatics

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PROJECT PLANNING

• Current Task List
• List of Use Cases

ONCOLOGY WG PRODUCTS

OMOP CDM Oncology Module

1. OMOP CDM Oncology Extension (Complete PDF)
2. Part 1: "Oncology Extension Summary" (Power Point presentation)
3. Part 2: "Oncology Extension Detailed" (Word document)

OMOP CDM Extension Implementing Oncology Module

ETL Instructions for converting Tumor Registry Data to OMOP

1. ETL Instructions for Mapping ICD-O diagnoses to SNOMED
2. ETL Instructions for Mapping NAACCR Treatment Data into the OMOP-CDM - in progress
3. DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables

** WORK IN-PROGRESS **

• Ingestion of NAACCR into the OMOP vocabulary - in progress
• Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers - in progress

PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS

• OHDSI CDM Wokgroup, Dec 2018: "Oncology Extension Presentation"
• AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"
• OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM"
• OHDSI 2018 Symposium: poster "SNOMED Extensions"
• 2018 OHDSI State of Collaborative: presentation
• 2017 Report to NCI: "Oncology Data Representation Challenges"

References and Archive