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documentation:software:atlas:vocabulary [2016/09/07 16:28] – [Results] jhardindocumentation:software:atlas:vocabulary [2019/05/30 20:47] (current) – anthonysena
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 ~~NOTOC~~ ~~NOTOC~~
  
-====== Vocabulary ======+===== IMPORTANT NOTE ===== 
 + 
 +All ATLAS documentation has moved to [[https://github.com/OHDSI/ATLAS/wiki|GitHub]]. Please disregard the content below as it is legacy and kept for posterity. 
 + 
 +====== Vocabulary (LEGACY) ======
 Atlas provides the ability to search and explore the [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:vocabulary|OMOP standardized vocabulary]]. This functionality was originally built as part of the [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:hermes|Hermes working group]] and now Hermes has been fully incorporated into Atlas.  Atlas provides the ability to search and explore the [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:vocabulary|OMOP standardized vocabulary]]. This functionality was originally built as part of the [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:hermes|Hermes working group]] and now Hermes has been fully incorporated into Atlas. 
  
-Select "Vocabulary" in the Atlas left hand menu to bring up the search screen. You will see 4 tabs: search, advanced, results and import. Each section will be described in more detail.+Select "Vocabulary" in the Atlas left hand menu to bring up the search screen. You will see 2 tabs: search and import. Each section will be described in more detail.
  
 +{{ documentation:software:atlas:atlas_vocab_search.png |}}
 ===== Search ===== ===== Search =====
 ---- ----
 Type in a search term and Atlas will search the entire standardized vocabulary for concepts that match that term. It will do a wildcard search so if you search for a term like "dementia" it will look for concepts that contain the term dementia. Once the search is complete, the results will show in the results tab. Type in a search term and Atlas will search the entire standardized vocabulary for concepts that match that term. It will do a wildcard search so if you search for a term like "dementia" it will look for concepts that contain the term dementia. Once the search is complete, the results will show in the results tab.
  
-===== Advanced =====+{{ documentation:software:atlas:atlas_vocab_dementia.png |}} 
 +===== Advanced Options =====
 ---- ----
-This will allow you to perform a search query and specifically filter the results down to a specific set of vocabularies and domains. +This option is available below the 'search' button and will allow you to perform a search query and specifically filter the results down to a specific set of vocabularies and domains. 
  
 ===== Results ===== ===== Results =====
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   * Shopping Cart: Clicking on the shopping cart will allow you to select the concept for use in new [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:concept_sets|Creating concept sets]].  If you do not have a concept set open, this will automatically start a new concept set for you.   * Shopping Cart: Clicking on the shopping cart will allow you to select the concept for use in new [[http://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:concept_sets|Creating concept sets]].  If you do not have a concept set open, this will automatically start a new concept set for you.
   
 +
 +{{documentation:software:atlas:atlas_vocab_dementia_boxes.png|}}
 ===== Import ===== ===== Import =====
 ---- ----
documentation/software/atlas/vocabulary.1473265691.txt.gz · Last modified: by jhardin

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