documentation:software:heracles
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| documentation:software:heracles [2015/04/09 19:01] – created jduke | documentation:software:heracles [2015/04/23 16:36] (current) – jduke | ||
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| **Requirements** | **Requirements** | ||
| * Data in OMOP CDM v4/v5 | * Data in OMOP CDM v4/v5 | ||
| - | * [[https:// | + | * COHORT and COHORT_DEFINITION tables (or other tables following the OMOP V5 cohort table format) |
| - | * Cohort and Cohort | + | |
| + | **Installation** | ||
| + | * Install [[documentation: | ||
| + | * Advanced users may reference | ||
| + | |||
| + | **Use** | ||
| + | |||
| + | * Select a Cohort | ||
| + | |||
| + | {{ : | ||
| + | |||
| + | * Select analyses individually (as listed below) or as part of a report package (bundle of analyses that will enable Heracles to build a particular visual report of a particular area of interest (e.g., drug exposure)). | ||
| + | |||
| + | {{ : | ||
| + | |||
| + | Optional parameters include | ||
| + | |||
| + | * Specific concept ID's to run for conditions, drugs, procedures, observations, | ||
| + | * Small Cell Count (minimum number of patients to return for any category) | ||
| + | * Run Heracles Heel for data quality analyses | ||
| + | * Limit the analyses to only events occurring within the Cohort | ||
| + | |||
| + | * Your analysis will be sent to the Job Manager. | ||
| + | |||
| + | |||
| + | **Heracles Viewer** | ||
| + | |||
| **Heracles Analysis List** | **Heracles Analysis List** | ||
| - | Source name | + | Person |
| - | Number of persons | + | * Source name |
| - | Number of persons by gender | + | |
| - | Number of persons by year of birth | + | |
| - | Number of persons by race | + | |
| - | Number of persons by ethnicity | + | |
| - | Number of persons with invalid provider_id | + | |
| - | Number of persons with invalid location_id | + | |
| - | Number of persons with invalid care_site_id | + | |
| - | Number of persons by age, with age at first observation period | + | |
| - | Number of persons by gender by age, with age at first observation period | + | |
| - | Distribution of age at first observation period | + | Observation Period |
| - | Distribution of age at first observation period by gender | + | * Number of persons by age, with age at first observation period |
| - | Length of observation (days) of first observation period | + | |
| - | Length of observation (days) of first observation period by gender | + | |
| - | Length of observation (days) of first observation period by age decile | + | |
| - | Number of persons by length of observation period, in 30d increments | + | |
| - | Number of persons with continuous observation in each year | + | |
| - | Number of persons with continuous observation in each month | + | |
| - | Number of persons by observation period start month | + | |
| - | Number of persons by observation period end month | + | |
| - | Number of persons by number of observation periods | + | |
| - | Number of persons with observation period before year-of-birth | + | |
| - | Number of persons with observation period end < observation period start | + | |
| - | Number of persons with at least one day of observation in each year by gender and age decile | + | |
| - | Number of persons with at least one day of observation in each month | + | |
| - | Number of persons with at least one visit occurrence, by visit_concept_id | + | |
| - | Number of visit occurrence records, by visit_concept_id | + | |
| - | Number of persons by visit occurrence start month, by visit_concept_id | + | |
| - | Number of distinct visit occurrence concepts per person | + | |
| - | Number of persons with at least one visit occurrence, by visit_concept_id by calendar year by gender by age decile | + | Visit Occurrence |
| - | Distribution of age by visit_concept_id | + | |
| - | Number of visit records with invalid person_id | + | * Number of persons with at least one visit occurrence, by visit_concept_id |
| - | Number of visit records outside valid observation period | + | |
| - | Number of visit records with end date < start date | + | |
| - | Number of visit records with invalid care_site_id | + | |
| - | Distribution of length of stay by visit_concept_id | + | |
| - | Number of visit occurrence records by visit occurrence start month | + | |
| - | Number of persons with at least one condition occurrence, by condition_concept_id | + | |
| - | Number of condition occurrence records, by condition_concept_id | + | |
| - | Number of persons by condition occurrence start month, by condition_concept_id | + | |
| - | Number of distinct condition occurrence concepts per person | + | |
| - | Number of persons with at least one condition occurrence, by condition_concept_id by calendar year by gender by age decile | + | |
| - | Number of condition occurrence records, by condition_concept_id by condition_type_concept_id | + | |
| - | Distribution of age by condition_concept_id | + | |
| - | Number of condition occurrence records with invalid person_id | + | |
| - | Number of condition occurrence records outside valid observation period | + | Condition Occurrence |
| - | Number of condition occurrence records with end date < start date | + | |
| - | Number of condition occurrence records with invalid provider_id | + | * Number of condition occurrence records, by condition_concept_id |
| - | Number of condition occurrence records with invalid visit_id | + | |
| - | Number of condition occurrence records by condition occurrence start month | + | |
| - | Number of persons with death, by cause_of_death_concept_id | + | |
| - | Number of records of death, by cause_of_death_concept_id | + | |
| - | Number of persons by death month | + | |
| - | Number of persons with a death, by calendar year by gender by age decile | + | |
| - | Number of death records, by death_type_concept_id | + | |
| - | Distribution of age at death by gender | + | |
| - | Number of death records with invalid person_id | + | |
| - | Number of death records outside valid observation period | + | |
| - | Distribution of time from death to last condition | + | |
| - | Distribution of time from death to last drug | + | |
| - | Distribution of time from death to last visit | + | Death |
| - | Distribution of time from death to last procedure | + | |
| - | Distribution of time from death to last observation | + | * Number of persons with death, by cause_of_death_concept_id |
| - | Number of persons with at least one procedure occurrence, by procedure_concept_id | + | |
| - | Number of procedure occurrence records, by procedure_concept_id | + | |
| - | Number of persons by procedure occurrence start month, by procedure_concept_id | + | |
| - | Number of distinct procedure occurrence concepts per person | + | |
| - | Number of persons with at least one procedure occurrence, by procedure_concept_id by calendar year by gender by age decile | + | |
| - | Number of procedure occurrence records, by procedure_concept_id by procedure_type_concept_id | + | |
| - | Distribution of age by procedure_concept_id | + | |
| - | Number of procedure occurrence records with invalid person_id | + | |
| - | Number of procedure occurrence records outside valid observation period | + | |
| - | Number of procedure occurrence records with invalid provider_id | + | |
| - | Number of procedure occurrence records with invalid visit_id | + | |
| - | Number of procedure occurrence records | + | |
| - | Number of persons with at least one drug exposure, by drug_concept_id | + | |
| - | Number of drug exposure records, by drug_concept_id | + | Procedure Occurrence |
| - | Number of persons by drug exposure start month, by drug_concept_id | + | |
| - | Number of distinct drug exposure concepts per person | + | * Number of persons with at least one procedure occurrence, by procedure_concept_id |
| - | Number of persons with at least one drug exposure, by drug_concept_id by calendar year by gender by age decile | + | |
| - | Number of drug exposure records, by drug_concept_id by drug_type_concept_id | + | |
| - | Distribution of age by drug_concept_id | + | |
| - | Number of drug exposure records with invalid person_id | + | |
| - | Number of drug exposure records outside valid observation period | + | |
| - | Number of drug exposure records with end date < start date | + | |
| - | Number of drug exposure records with invalid provider_id | + | |
| - | Number of drug exposure records with invalid visit_id | + | |
| - | Distribution of days_supply by drug_concept_id | + | |
| - | Distribution of refills by drug_concept_id | + | |
| - | Distribution of quantity by drug_concept_id | + | |
| - | Number of drug exposure records | + | |
| - | Number of persons with at least one observation occurrence, by observation_concept_id | + | Drug Exposure |
| - | Number of observation occurrence records, by observation_concept_id | + | |
| - | Number of persons by observation occurrence start month, by observation_concept_id | + | * Number of persons with at least one drug exposure, by drug_concept_id |
| - | Number of distinct observation occurrence concepts per person | + | |
| - | Number of persons with at least one observation occurrence, by observation_concept_id by calendar year by gender by age decile | + | |
| - | Number of observation occurrence records, by observation_concept_id by observation_type_concept_id | + | |
| - | Distribution of age by observation_concept_id | + | |
| - | Number of observation occurrence records, by observation_concept_id and unit_concept_id | + | |
| - | Number of observation records with invalid person_id | + | |
| - | Number of observation records outside valid observation period | + | |
| - | Number of observation records with invalid provider_id | + | |
| - | Number of observation records with invalid visit_id | + | |
| - | Number of observation records with no value (numeric, string, or concept) | + | |
| - | Distribution of numeric values, by observation_concept_id and unit_concept_id | + | |
| - | Distribution of low range, by observation_concept_id and unit_concept_id | + | |
| - | Distribution of high range, by observation_concept_id and unit_concept_id | + | |
| - | Number of observation records below/ | + | |
| - | Number of observation records | + | |
| - | Number of persons with at least one drug era, by drug_concept_id | + | |
| - | Number of drug era records, by drug_concept_id | + | Observation |
| - | Number of persons by drug era start month, by drug_concept_id | + | |
| - | Number of distinct drug era concepts per person | + | * Number of persons with at least one observation occurrence, by observation_concept_id |
| - | Number of persons with at least one drug era, by drug_concept_id by calendar year by gender by age decile | + | |
| - | Distribution of age by drug_concept_id | + | |
| - | Distribution of drug era length, by drug_concept_id | + | |
| - | Number of drug eras without valid person | + | |
| - | Number of drug eras outside valid observation period | + | |
| - | Number of drug eras with end date < start date | + | |
| - | Number of drug era records | + | |
| - | Number of persons with at least one condition era, by condition_concept_id | + | |
| - | Number of condition era records, by condition_concept_id | + | |
| - | Number of persons by condition era start month, by condition_concept_id | + | |
| - | Number of distinct condition era concepts per person | + | |
| - | Number of persons with at least one condition era, by condition_concept_id by calendar year by gender by age decile | + | |
| - | Distribution of age by condition_concept_id | + | |
| - | Distribution of condition era length, by condition_concept_id | + | |
| - | Number of condition eras without valid person | + | |
| - | Number of condition eras outside valid observation period | + | |
| - | Number of condition eras with end date < start date | + | |
| - | Number of condition era records by condition era start month | + | |
| - | Number of persons by location 3-digit zip | + | Measurement |
| - | Number of persons by location state | + | |
| - | Number of persons by place of service | + | * Number of persons with at least one measurement occurrence, by measurement_concept_id |
| - | Number of visits by place of service | + | * Number of measurement occurrence records, by measurement_concept_id |
| - | Number of records by cohort_concept_id | + | * Number of persons by measurement occurrence start month, by measurement_concept_id |
| - | Number of records with cohort end date < cohort start date | + | * Number of distinct measurement occurrence concepts per person |
| - | Number of persons by age, with age at cohort start | + | * Number of persons with at least one measurement occurrence, by measurement_concept_id by calendar year by gender by age decile |
| - | Distribution of age at cohort start | + | * Number of measurement occurrence records, by measurement_concept_id by measurement_type_concept_id |
| - | Distribution of age at cohort start by gender | + | * Distribution of age by measurement_concept_id |
| - | Distribution of age at cohort start by cohort start year | + | * Number of measurement occurrence records, by measurement_concept_id and unit_concept_id |
| - | Number of persons by duration from cohort start to cohort end, in 30d increments | + | * Number of measurement records with invalid person_id |
| - | Number of persons by duration from observation start to cohort start, in 30d increments | + | * Number of measurement records outside valid measurement period |
| - | Number of persons by duration from cohort start to observation end, in 30d increments | + | * Number of measurement records with invalid provider_id |
| - | Number of persons by duration from cohort end to observation end, in 30d increments | + | * Number of measurement records with invalid visit_id |
| - | Distribution of duration (days) from cohort start to cohort end | + | * Number of measurement records with no value (numeric, string, or concept) |
| - | Distribution of duration (days) from cohort start to cohort end, by gender | + | * Distribution of numeric values, by measurement_concept_id and unit_concept_id |
| - | Distribution of duration (days) from cohort start to cohort end, by age decile | + | * Distribution of low range, by measurement_concept_id and unit_concept_id |
| - | Distribution of duration (days) from observation start to cohort start | + | * Distribution of high range, by measurement_concept_id and unit_concept_id |
| - | Distribution of duration (days) from cohort start to observation end | + | * Number of measurement records below/ |
| - | Distribution of duration (days) from cohort end to observation end | + | * Number of measurement records |
| - | Number of persons by cohort start year by gender by age decile | + | |
| - | Number of persons by cohort start month | + | Drug Era |
| - | Number of persons by number of cohort periods | + | |
| - | Number of persons by duration from cohort start to first occurrence of condition occurrence, by condition_concept_id | + | * Number of persons with at least one drug era, by drug_concept_id |
| - | Number of events by duration from cohort start to all occurrences of condition occurrence, by condition_concept_id | + | |
| - | Number of persons by duration from cohort start to first occurrence of procedure occurrence, by procedure_concept_id | + | |
| - | Number of events by duration from cohort start to all occurrences of procedure occurrence, by procedure_concept_id | + | |
| - | Number of persons by duration from cohort start to first occurrence of drug exposure, by drug_concept_id | + | |
| - | Number of events by duration from cohort start to all occurrences of drug exposure, by drug_concept_id | + | |
| - | Number of persons by duration from cohort start to first occurrence of observation, | + | |
| - | Number of events by duration from cohort start to all occurrences of observation, | + | |
| - | Number of persons by duration from cohort start to first occurrence of condition era, by condition_concept_id | + | |
| - | Number of events by duration from cohort start to all occurrences of condition era, by condition_concept_id | + | |
| - | Number of persons by duration from cohort start to first occurrence of drug era, by drug_concept_id | + | |
| - | Number of events by duration from cohort start to all occurrences of drug era, by drug_concept_id | + | |
| + | Condition Era | ||
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| + | * Number of persons with at least one condition era, by condition_concept_id | ||
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| + | Location | ||
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| + | * Number of persons by location 3-digit zip | ||
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| + | Care Site | ||
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| + | * Number of persons by place of service | ||
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| + | Cohort Analyses | ||
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| + | * Number of records by cohort_concept_id | ||
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documentation/software/heracles.1428606090.txt.gz · Last modified: by jduke