===== SPECIMEN ===== **THIS IS OUTDATED. All documentation is now on the [[https://github.com/OHDSI/CommonDataModel/wiki|github wiki]]. Please refer there or to the [[projects:workgroups:cdm-wg|CDM working group]] for more information** This table changed in version 5.1 of the OMOP CDM. The field specimen_datetime was added. ---- The specimen domain contains the records identifying biological samples from a person. ^Field^Required^Type^Description^ |specimen_id|Yes|integer|A unique identifier for each specimen.| |person_id|Yes|integer|A foreign key identifier to the Person for whom the Specimen is recorded.| |specimen_concept_id|Yes|integer|A foreign key referring to a Standard Concept identifier in the Standardized Vocabularies for the Specimen.| |specimen_type_concept_id|Yes|integer|A foreign key referring to the Concept identifier in the Standardized Vocabularies reflecting the system of record from which the Specimen was represented in the source data.| |specimen_date|Yes|date|The date the specimen was obtained from the Person.| |specimen_datetime|No|datetime|The date and time on the date when the Specimen was obtained from the person.| |quantity|No|float|The amount of specimen collection from the person during the sampling procedure.| |unit_concept_id|No|integer|A foreign key to a Standard Concept identifier for the Unit associated with the numeric quantity of the Specimen collection.| |anatomic_site_concept_id|No|integer|A foreign key to a Standard Concept identifier for the anatomic location of specimen collection.| |disease_status_concept_id|No|integer|A foreign key to a Standard Concept identifier for the Disease Status of specimen collection.| |specimen_source_id|No|varchar(50)|The Specimen identifier as it appears in the source data.| |specimen_source_value|No|varchar(50)|The Specimen value as it appears in the source data. This value is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.| |unit_source_value|No|varchar(50)|The information about the Unit as detailed in the source.| |anatomic_site_source_value|No|varchar(50)|The information about the anatomic site as detailed in the source.| |disease_status_source_value|No|varchar(50)|The information about the disease status as detailed in the source.| ==== Conventions ==== * Anatomic site is coded at the most specific level of granularity possible, such that higher level classifications can be derived using the Standardized Vocabularies.