documentation:next_cdm:visualization
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documentation:next_cdm:visualization [2017/01/29 13:43] sigfried |
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| ===== Vocabulary/Population Visualization Working Group ===== | ===== Vocabulary/Population Visualization Working Group ===== | ||
| - | - overall goals: | + | Work on this has moved to its own working group for now: http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:vocab-viz |
| - | - make individual OHDSI vocabularies more approachable | + | |
| - | - facilitate understanding of OHDSI's vocabularies and concepts, relationships between them, and their prevelance in a specific CDM | + | |
| - | - facilitate translation from individual source concepts for cohort or phenotype definition and for ETL work | + | |
| - | - facilitate development or translation of concept sets | + | |
| - | - provide tools and interface for classification/granularity selection in other contexts (e.g., patient profiles) | + | |
| - | - towards these ends: | + | |
| - | - develop detailed requirements, designs, and prototypes | + | |
| - | - implement in ATLAS if and when resources are available | + | |
| - | - use cases: | + | |
| - | - source(s) to target(s): | + | |
| - | - find mapped or matching codes, classification or standard | + | |
| - | - in target code(s) selected, see which source codes are added or left out and counts of corresponding patient records | + | |
| - | - explore the whole set of OHDSI vocabularies: | + | |
| - | - in general | + | |
| - | - only for concepts in user's CDM | + | |
| - | - for a specific domain: | + | |
| - | - e.g., provider specialty, show record counts for all values including zero counts for specialties not used; maybe also show corresponding source values and source values that weren't able to be mapped to a target. (provider.specialty_concept_id, provider.specialty_source_value, provider.specialty_source_concept_id, care_site.specialty_concept_id, care_site.specialty_source_value) | + | |
| - | - to better understand relationships between source and target domains | + | |
| - | - to better understand classifications available | + | |
| - | - find a concept: | + | |
| - | - have immediate feedback on CDM records with concept | + | |
| - | - see relationships to other concepts and be encouraged to assure one has chosen correctly | + | |
| - | - define a cohort or phenotype: | + | |
| - | - translate existing phenotype definition (e.g., set of ICD-9 codes for some condition) from a source vocabulary into a target vocabulary | + | |
| - | - explore my popupaltion: | + | |
| - | - overall | + | |
| - | - in terms of some domain | + | |
| - | - defining a subpopulation (same as 1) | + | |
| - | - intersecion of subpopulations | + | |
| - | - Patrick's SNOMED navigation strategy: | + | |
| - | - using related concepts filter on Class, choose Has ancestor of from Relationship facet, filter on Distance facet | + | |
| - | - compare vocabulary version as per [[http://forums.ohdsi.org/t/new-vocabulary-population-visualization-working-group/2187/17?u=sigfried_gold|Peter's post]] | + | |
| - | - notes and to-dos: | + | |
| - | - other systems to get ideas from: | + | |
| - | - http://outins.com/ | + | |
| - | - http://jigsaw.io/ | + | |
| - | - http://www.ephir.com/ | + | |
| - | - http://www.aviz.fr/Research/Nodetrix | + | |
| - | - javascript libraries to consider using: | + | |
| - | - https://www.golden-layout.com/examples/ | + | |
| - | - to-dos: | + | |
| - | - integrate ERD maybe: | + | |
| - | - http://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:omop_cdm_v5_erd.pdfkjjjjjjj | + | |
| - | - source record count: | + | |
| - | - show these as existing in cdm but not available through query | + | |
| - | - also show ancestor concepts with their descendant record counts | + | |
| - | - only show classification concepts that have a descendant record count | + | |
| - | - default to showing 4 main domains (condition, drug, procedure, measurement) | + | |
documentation/next_cdm/visualization.txt · Last modified: 2017/01/31 15:14 by sigfried
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