Documentation
Common Data Model (CDM)
Convert Database to CDM (ETL)
Tool Specific Documentation
Common Data Model (CDM)
Convert Database to CDM (ETL)
Tool Specific Documentation
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Face-to-Face Oncology Meeting Notes
Next steps
I. Tasks to generate the minimal viable product
1. Diagnosis
a. Vocabulary Mapping
b. Diagnosis identification and verification
c. Cancer diagnosis representation in OMOP CDM – possible extension to represent recurrences
2. Staging Choose vocabulary
3. Treatments a. Drugs • Compare SEER drugs list with RxNorm cancer drug classes and decide which one should be used in the vocabulary. If SEER is more suitable, add SEER classification to the vocabulary. • Add SEER drug cocktails to the vocabulary (only ingredients, no other specifics) in EMR based on those combinations. • Identify chemo regimens in EMR using SEER cocktails and validate with chemo orders when available • Work on cancer Drug Era algorithm and modeling in CDM b. Overlay cancer registry treatment schema (first occurrence only) with EMR details to construct complete treatment regimen c. Model representation of the treatment regimen (era) in the CDM
II. Exploratory 1. Discuss with IMO procedure mappings to SNOMED and classification of cancer cases. 2. Explore commercial solutions that claim to identify cancer treatment regimens, recurrences, progression and compare the outcomes with our attempts to identify treatment regimens 3. Invite Andrew Stewart and Mark Denise to present their efforts and results in mapping to CDM and additional modeling 4. Find a geneticist and oncologist to identify cancer-relevant genomic areas 5. Find out if we can get cancer registry data from any of the “SEER” states
III. Operational 1. Document challenges related to extending OHDSI infrastructure to support cancer research for NCI