Observational Health Data Sciences and Informatics

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
** Documentation Planning **
  * {{ :documentation:oncology:Oncology_Documentation_Scope.docx | Oncology Documentation Scope (Word document)}}

**PROJECT PLANNING**

  * {{https://github.com/OHDSI/OncologyWG/issues | Current Task List}}
  * {{https://github.com/OHDSI/OncologyWG/wiki/Cancer-registry-uses-cases | List of Use Cases}}

**ONCOLOGY WG PRODUCTS**

 __OMOP CDM Oncology Module__

  * {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}}
  * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}}
  * {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}}

__OMOP CDM Extension Implementing Oncology Module__

  * {{https://github.com/OHDSI/OncologyWG/tree/master/ddl|DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}}


__ETL Instructions for converting Tumor Registry Data to OMOP__
  * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR - OMOP Diagnosis Crosswalk.pdf|Crosswalk from Tumor Registry to OMOP}}
  * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR%20ETL%20Steps.docx?raw=true|High Level ETL Steps}}
  * {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}}
  *{{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR.Ingestion.into.OMOP.Vocabulary.-.Diagnostic.Modifiers.docx|ETL of NAACCR diagnosis and diagnostic modifiers}}
  * {{https://github.com/OHDSI/OncologyWG/issues/6| Ingestion of NAACCR into the OMOP vocabulary
}}



** WORK IN-PROGRESS **

  * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress

**PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS**

  * {{https://www.ohdsi.org/2019-us-symposium-showcase-27/ | OMOP CDM Oncology Module at Work }}
  * {{https://www.ohdsi.org/2019-us-symposium-showcase-11/|HemOnc: A New Standard Vocabulary for Oncology Drug Regimen Representation in the OMOP Common Data Model}}
  * {{https://www.ohdsi.org/2019-us-symposium-showcase-12/ | Conversion of Diagnosis and Chemotherapy Data in Electronic Health Records to Episode-based Oncology Extension of OMOP-CDM }}
  * {{https://www.ncbi.nlm.nih.gov/pubmed/31238109 | HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model}}
  * {{https://www.ncbi.nlm.nih.gov/pubmed/31438365 |Standardized Observational Cancer Research Using the OMOP CDM Oncology Module}}
  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:amia_2018_s77_panel.pptx|AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}}

  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_european_symposium_poster.pdf|OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM"}}

  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_symposium_poster.pdf|OHDSI 2018 Symposium: poster "SNOMED Extensions"}}

  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx|2018 OHDSI State of Collaborative: presentation}}
  *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx|2017 Report to NCI: "Oncology Data Representation Challenges"}}



**[[documentation:oncology:archive|References and Archive]]**

  * {{ :documentation:oncology:2019-12-06_08.59.29_oncology_wg_-_genomic_subgroup_meeting_412862164.zip | Genomic Recording (zip)}}
Observational Health Data Sciences and Informatics

User Tools

Site Tools

Page Tools
