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documentation:vocabulary:amt [2016/11/21 17:25] (current)
aostropolets created
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 +Overall Structure of vocabulary meets criteria described here: http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​drug
 +Original AMT is presented as part of Australian SNOMED that contains only drugs with the following classes:
 +^ SOURCE CLASS                    ^ NEW CLASS           |
 +| AU Qualifier ​                   | AU Qualifier ​       |
 +| AU Substance ​                   | AU Substance ​       |
 +| Trade product ​                  | Trade Product ​      |
 +| containered trade product pack  | Contain Trade Pack  |
 +| trade product unit of use       | Trade Product Unit  |
 +| trade product pack              | Trade Product Pack  |
 +| medicinal product ​              | Medicinal Product ​  |
 +| medicinal product pack          | Med Product Pack    |
 +| medicinal product unit of use   | Med Product Unit    |
 +
 +AU Qualifier represents Dose Form (137011000036104 ointment) or Unit (700000751000036105 microgram/​mL),​ AU Substance - Ingredient (2319011000036106 metformin hydrochloride).
 +
 +Trade Product refers to Brand Name (For example, 61131000168107 Avandamet 4/1000). According to OMOP CDM rules we use as Brand Names only those Trade products that don't replicate names of ingredients (for example, 106561000036102 Acetylcysteine).
 +
 +Medicinal Product represents ingredient(s) of a drug and duplicate the corresponding AU Substance (For example, 21614011000036102 metformin or 160681000036109 saxagliptin + metformin). Therefore, medicinal products haven’t made it into the AMT vocabulary.
 +
 +Medicinal product unit of use represents Clinical Drug or Quantified Clinical Drug (For example, 23360011000036106 metformin hydrochloride 1 g tablet).
 +
 +Medicinal product pack corresponds to Clinical Drug Box (For example, 16921000036107 ​ metformin hydrochloride 1 g tablet, 100).
 +
 +Trade product pack is Branded Drug Box, for instance, ​ 11491011000036102 Avandamet 2/1000 (metformin hydrochloride 1 g + rosiglitazone 2 mg) tablet: film-coated,​ 56 tablets
 +Trade product unit of use  is Branded Drug or Quantified ​ Branded Drug  (4657011000036107 Avandamet 4/1000 tablet: film-coated).
 +
 +Containered trade product pack refers to Branded Drug Box, for instance, ​ 18061011000036103 Avandamet 4/1000 (metformin hydrochloride 1 g + rosiglitazone 4 mg) tablet: film-coated,​ 56 tablets, blister pack
 +AMT doesn'​t provide Supplier as a separate concept, so we parsed drug descriptions in order to get suppliers, for example, Pfizer or Ipc (stands for Independent Pharmacy Cooperative).
 +
 +
 +**Drug strength**
 +
 +AMT contains drug strength only for medicinal product unit of use, so the relationship between classes were followed in order to obtain the dosages for other drug classes.
 +There are some features:
 +
 +• AMT has oral solutions presented in 5 ml volume. As this volume is a volume of a teaspoon, we classifiend this drugs not as quantified but as regular drugs with denominator_value =1. 
 +
 +• Concentration given is useless ​
 +87010011000036105 ​ bicarbonate + sodium chloride nasal drops, 60 x 2.16 g sachets
 +
 +• No dosage given 
 +86615011000036106 Aqueous Cream (Orion) (emulsifying wax + liquid paraffin + water purified + white soft paraffin) cream
 +
 +**Packs** ​
 +
 +In AMT some original codes represent packs, OMOP-codes for their content were generated. For example, 736221000168103 Afeme Duo (Clotrimazole 10 Mg / 1 G) Cream [10 G] (&) (Fluconazole 150 Mg) Hard Capsule [1 Capsule], 1 Pack 
 +
 +**Concepts that are non-drugs** ​
 +
 +AMT vocabulary contains devices such as bandages, syringes, food supplements,​ etc. Please see http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​domains for Domain rules definition. Non-drugs don't have RxNorm or RxNorm Extension equivalents and relationships,​ they are presented in OMOP vocabulary as standard concepts. For example, 48846011000036103 Accu-Chek Go diagnostic strip/
 +
  
documentation/vocabulary/amt.txt · Last modified: 2016/11/21 17:25 by aostropolets