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documentation:vocabulary:dmd [2016/07/06 11:54]
dimshitc1
documentation:vocabulary:dmd [2016/07/14 12:23] (current)
dimshitc1
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 RxNorm and RxNorm extended concept then have all usual relationships and drug_strenght tables (between Ingredient and Drug, Brand Name and Branded Drug and other) RxNorm and RxNorm extended concept then have all usual relationships and drug_strenght tables (between Ingredient and Drug, Brand Name and Branded Drug and other)
   
-**1. Ingredients**+**1. Ingredients**\\
  all Ingredients and VTMs Maps to RxNorm or RxNorm Extension Ingredients ​  all Ingredients and VTMs Maps to RxNorm or RxNorm Extension Ingredients ​
 if there is VTM containing several ingredients,​ we map them to each ingredient if there is VTM containing several ingredients,​ we map them to each ingredient
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 --can give an example only after script run --can give an example only after script run
  
-**2. Concept Classes**+**2. Concept Classes**\\
 Original dm+d classes (VTM, AMP, AMPP, etc.) are placed in column source_concept_class_id. Original dm+d classes (VTM, AMP, AMPP, etc.) are placed in column source_concept_class_id.
 Concept_class_id is standardized and defined by the rules described here: Concept_class_id is standardized and defined by the rules described here:
 http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​drug http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​drug
  
-**3. Brand Names**+**3. Brand Names**\\
 Dm+d doesn'​t provide Brand Name as a separate concept, so we parsed drug descriptions in order to get Brand names. Dm+d doesn'​t provide Brand Name as a separate concept, so we parsed drug descriptions in order to get Brand names.
 We use here not a clear Brand Name but any Name differs from Dose Form and Ingredient but used as a part of Drug name by Supplier, for example We use here not a clear Brand Name but any Name differs from Dose Form and Ingredient but used as a part of Drug name by Supplier, for example
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 -- add example of RxNorm extension Brand Name concept when it'll be done -- add example of RxNorm extension Brand Name concept when it'll be done
  
-**4. Drug Packs:**+**4. Drug Packs:**\\
 built Drug Packs with RxNorm like relationships built Drug Packs with RxNorm like relationships
  
-**5. Devices**+**5. Devices**\\
 Dm+d vocabulary contains devices such as bandages, syringes, food supplements,​ etc.  Dm+d vocabulary contains devices such as bandages, syringes, food supplements,​ etc. 
 Please see http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​domains for Domain rules definition. Please see http://​www.ohdsi.org/​web/​wiki/​doku.php?​id=documentation:​vocabulary:​domains for Domain rules definition.
 Devices don't have RxNorm Extension equivalents and relationships,​ they present in OMOP vocabulary as standard concepts Devices don't have RxNorm Extension equivalents and relationships,​ they present in OMOP vocabulary as standard concepts
   
-**6. Supplier**+**6. Supplier**\\
 Supplier info added, made relationships between Marketed Drug Product and Supplier: relationships 'Has supplier'​ и '​Supplier of' as discribed Supplier info added, made relationships between Marketed Drug Product and Supplier: relationships 'Has supplier'​ и '​Supplier of' as discribed
 and between Marketed Drug Product and related Drug-concept relationship_id in ('Has marketed form', '​Marketed form of') and between Marketed Drug Product and related Drug-concept relationship_id in ('Has marketed form', '​Marketed form of')
   
-**7. Drug_strength issues** +**7. Drug_strength issues**\\
 Most part of the drugs are parsed into ds_stage and then into drug_strenght tables but some of them can't be, some examples of these unparsable drugs Most part of the drugs are parsed into ds_stage and then into drug_strenght tables but some of them can't be, some examples of these unparsable drugs
 No dosage given: ​ No dosage given: ​
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 so this 8.09g is totally useless in purpose of drug_strenght building so this 8.09g is totally useless in purpose of drug_strenght building
   
 +**8. Percents recalculation** 
 +mostly is obvious, but  \\ 
 +sometimes they don't give exact quantitative factor info so define it by the Drug form, for example 
 +"Avoca 95% silver nitrate applicators (Bray Group Ltd) 100 applicator 10 x 10 applicators"​ 
 +and this is "95% w/w (weight / weight) silver nitrate pencil " , in other words 0,95 mg / mg. 
 + 
documentation/vocabulary/dmd.txt · Last modified: 2016/07/14 12:23 by dimshitc1