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Clinical Trials Working Group

Objective: To allow adequate representation of clinical trial data in OMOP.

First use case: To convert clinical trial data in CDISC SDTM format to OMOP, with a view to allowing trial planning optimization.

Approach: We advocate minimum changes to the OMOP CDM and Standardized Vocabularies because we want to ensure minimum impact on OHDSI tools like Atlas, whilst providing a value-add SDTM-to-OMOP conversion with minimum data loss. We have proposed conventions introducing new concepts and modifiers, but no new CDM tables; and providing guidance for ETL developers where appropriate. Our proposals are built on OMOP CDM v6 and the Oncology extension, with v5.3.1 backward compatibility.

Status:
- Proposals submitted to the OHDSI community in July 2020.
- Currently applying our proposed conventions to the PHUSE database (a synthetic SDTM database).

Membership

WG co-leads: Miki Hamidi, Pfizer, US (Kamiar.Hamidi@pfizer.com) Zhen Lin, Robot Bacon, US (lin.zhen@gmail.com)

Current members


Conventions proposal submitted to OHDSI
https://github.com/OHDSI/CommonDataModel/issues/358

Group GitHub repository
https://github.com/OHDSI/ClinicalTrialsWGETL


Meetings

Schedule: Biweekly calls on Fridays, 3pm UK time (10am Eastern) on Teams here

Note on accessing Teams channel above:
* If you use the Teams desktop app and have multiple accounts, ensure you are already in the OHDSI Teams account before clicking the link above
* Alternatively, select the “web app” button in the link above for accessing meetings on your browser


Want to contribute to the group? Email Kamiar.Hamidi@pfizer.com or lin.zhen@gmail.com

projects/workgroups/clinicalstudy.1623271278.txt.gz · Last modified: 2021/06/09 20:41 by saraujo