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OHDSI Natural Language Processing Working Group
Objective
The primary goal of the NLP working group is to promote the use of textual information from Electronic Health Records (EHRs) for observational studies under the OHDSI umbrella. To facilitate this objective, the group will develop methods and software that can be implemented to utilize clinical text for studies by the OHDSI community.
Project Lead
Hua Xu OHDSI Collaborator Bio
Project Coordinator
Vipina K Keloth
OHDSI NLP WG Monthly Meeting
When: Second Wednesday of every month at 1 PM - 2 PM CT
Where: Click here to join the meeting
Monthly Meeting: Upcoming - November 10, 2021
Agenda
- Overview of the Post-acute sequelae of SARS-CoV-2 infection (PASC) study
- Inviting participation for a new project on Clinical Abbreviations Link to the meeting describing the project
- Discussion on the OMOP CDM Note_NLP paper draft and author guidelines.
- New project suggestions from the working group members.
Ongoing Projects
- Clinical Abbreviations
- Post-acute sequelae of SARS-CoV-2 infection (PASC) study
- Extraction, Transformation, and Load Process (ETL)
- Note type normalization
- Open source Python NLP package
Past Projects
- Note_NLP table
- COVID-19 testing normalization (TestNorm)
- Note type
- NLP tools: NLP Wrappers; THEIA; Ananke
Participants
| Participants | ||
|---|---|---|
| Hua Xu | Abraham Hartzema | Feifan Liu |
| Anupama Gururaj | David Sontag | Paris Nicolas |
| Nigam Shah | Arnab Bose | Mark Dredze |
| Noemie Elhadad | Lian Hu | Masoud Rouhizadeh |
| Jon Duke | Jan A Kors | Malcolm McRoberts |
| Alexandre Yahi | J van Der Lei | Nishanth Parameshwar Pavinkurve |
| Thomas Ginter | Peter R Rijnbeek | Carol Friedman |
| Olga Patterson | Vivienne Zhu | Miao Chen |
| George Hripsack | Bob Patterson | Jianlin Shi |
| Vojtech Huser | Michael Gurley | Vassilis Koutkias |
| Mark Khayter | Xiaoling Chen | Dan Schlegel |
| Karthik Natarajan | Hongfang Liu | Mark V Mai |
| Min Jiang | Hong Yu | Todd Lingren |
| Scott DuVall | Stephane Meystre | Jose Posada |
| Xiao Dong | Timothy Miller | Andrew E Williams |
| Ning Shang | Wendy Chapman | Vignesh Srinivasan |
| Jessie Tenenbaum | Elizabeth Marshall | Yuan Luo |
| Kathleen Nogueira | Noa Palmon | Kelly Peterson |
| Chris Ryan | Danielle Bitterman | Jimyung Park |
| Kate Weber | Alexander Sivura | Patrick Alba |
| Tarun | Xi Yang | Meliha Yetisgen |
| T.M. Seinen | Jiang Bian | Xiyu Ding |
| Georgina Kennedy | Yaoyun Zhang | Rui Zhang |
| Paul Heider | ||
Upcoming Meeting Dates (2021)
- November 10
- December 8
Repository
- NLP Tools in OHDSI GitHub https://github.com/OHDSI/NLPTools
- OHDSIananke https://github.com/thepanacealab/OHDSIananke
Past WG meetings (Agenda/Minutes/Recordings)
2021
2019
2018
2017
2016
2015
Microsoft Teams meeting
projects/workgroups/nlp-wg.1636432832.txt.gz · Last modified: 2021/11/09 04:40 by vipina
