projects:workgroups:wg_meeting_01092019
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projects:workgroups:wg_meeting_01092019 [2019/02/11 22:46] anu_gururaj2 |
projects:workgroups:wg_meeting_01092019 [2019/02/11 23:37] (current) anu_gururaj2 [Enterprise NLP needs] |
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| ===== 2019 Aims ===== | ===== 2019 Aims ===== | ||
| - | * Establish ETL for processing textual data into CDM | + | * Evaluate and revise textual CDM tables by sharing practical issues and lessons learnt during ETL for processing textual data into CDM |
| * Develop tools (within Atlas) to facilitate uses of NLP data for cohort building/phenotyping | * Develop tools (within Atlas) to facilitate uses of NLP data for cohort building/phenotyping | ||
| + | - Collaborate with eMERGE consortium: | ||
| + | - Presentation by Yuan Luo on March 13th, 2019 | ||
| * Conduct cross-site studies that use textual data | * Conduct cross-site studies that use textual data | ||
| * Continue developing other NLP resources | * Continue developing other NLP resources | ||
| - | * Collaborate with eMERGE consortium: | + | |
| - | - Presentation by Yuan Luo on March 13th, 2019 | + | ===== Ongoing Projects ===== |
| + | * Mapping of Note Types to LOINC/standard vocabulary – Karthik Natarajan, Ruth Reeves, and Jon Duke | ||
| + | - Karthik hopes to start working on this again, last progress was an evaluation against rule based system with Med (naive Bayes approach) | ||
| + | - Notes shared with Jon, loaded report names and generated n-grams, need to be tagged per ideas for mapping, Karthik to find somebody to tag/annotate, not accounting yet for linking them back to OMOP vocabulary, note-type needs to be standardized, the LOINC document ontology and Radlax are flattened here, both Note_type and Note_class are present, needs to be reviewed, leverage Jon's tool here | ||
| + | * Landscape Analysis of section identifier systems and proposal of a standard terminology for use – Hua Xu and Karthik Natarajan | ||
| + | - use SecTagger?, no other updates, Mitre has a tool called Zoner, need to review current Section Header tools, Stephane will share the terminology he has | ||
| + | * Mapping of CUIs to standard terminology – Juan Banda, need to add link to Juan's repo in the OHDSI NLP repo | ||
| + | * Standardization of term_modifiers and values – Hua Xu | ||
| + | |||
| + | ===== Presentation ===== | ||
| + | ==== Enterprise NLP needs ==== | ||
| + | * Fast deployment of NLP solutions through | ||
| + | - Task scheduling | ||
| + | - Resource management (distributed, scalable) | ||
| + | * Visual Analytics | ||
| + | - Search NLP outputs | ||
| + | - Extract information for research – phenotyping | ||
| + | * Enhanced security | ||
| + | - Multi-user | ||
| + | - Configurable | ||
| + | * Demo by Ergin Soysal | ||
projects/workgroups/wg_meeting_01092019.1549925204.txt.gz · Last modified: 2019/02/11 22:46 by anu_gururaj2
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