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projects:workgroups:wg_meeting_08142019 [2019/09/10 15:33] (current)
anu_gururaj2 created
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 +Please find the slides from the meeting below:
 +
 +{{ :​projects:​workgroups:​ohdsi-final.pdf |}}
 +
 +Please find the recording of the meeting below:
 +
 +{{ :​projects:​workgroups:​nlp_wg_20190814.mp4 |}}
 +
 +====== Action items updates: ======
 +
 +
 +===== Ongoing Projects =====
 +  * Mapping of Note Types to LOINC/​standard vocabulary – Karthik Natarajan, Ruth Reeves, and Jon Duke
 +        * bigrams shared by Jon
 +        * {{ :​projects:​workgroups:​report_type_tags_for_review.xlsx |}}, 
 +        * {{ :​projects:​workgroups:​report_bigrams_with_counts.xlsx |}}, 
 +        * need help to look through the tags and determine the appropriate tags/tag level, ​
 +        * use published literature to look at tags granularity
 +        * Broad categorization of tags (from LOINC, maybe?)
 +  * Landscape Analysis of section identifier systems and proposal of a standard terminology for use – Hua Xu and Karthik Natarajan 
 +  * Mapping of CUIs to standard terminology – Juan Banda, need to add link to Juan's repo in the OHDSI NLP repo
 +  * Standardization of term_modifiers and values – Hua Xu
 +  * Evaluate and revise textual CDM tables by sharing practical issues and lessons learnt during ETL for processing textual data into CDM – Ruth Reeves: discussion about modifiers representation in the notes_NLP table, potentially have a separate modifiers table? key-value pairs of modifiers and their allowed values
 +  * Develop tools (within Atlas) to facilitate uses of NLP data for cohort building/​phenotyping : Collaborate with eMERGE consortium
 +  * Conduct cross-site studies that use textual data
 +  * Continue developing other NLP resources
 +
 +===== Presentation =====
 +
 +  - Weakly supervised natural language understanding models for clinical text - Jason Fries
projects/workgroups/wg_meeting_08142019.txt · Last modified: 2019/09/10 15:33 by anu_gururaj2