https://www.ohdsi.org/web/wiki/ 2026-05-04T02:57:58+0000 https://www.ohdsi.org/web/wiki/ https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=wiki:favicon.ico text/html 2018-03-12T14:36:38+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:achilles_v_1_5&rev=1520865398&do=diff Achilles v1.5.0 Dependencies For WebAPI/Atlas The changes in this section pertain to additions to the Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) R Package for OMOP CDM v5 databases introduced in the v1.5.0 release. If you are setting up WebAPI/Atlas v2.2.0 or later to work with an OMOP CDM v5, please read this section to ensure all of the dependencies required are established otherwise aspects of WebAPI/Atlas may not work. text/html 2019-05-30T20:43:21+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:cohorts&rev=1559249001&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Editing Cohorts (LEGACY) ---------- When performing an analysis, usually the first step is to define the population of interest (also known as a cohort). This functionality was originally built as part of the text/html 2019-05-30T20:43:48+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:concept_sets&rev=1559249028&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Concept Sets (LEGACY) ---------- Atlas provides the ability to create concept sets: these are lists of concepts from the standardized vocabulary that taken together describe a topic of interest for a study. text/html 2019-05-30T20:44:15+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:configuration&rev=1559249055&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Configuration (LEGACY) ---------- Select the “configuration” menu item to review the data sources that have been configured in the source configuration section. This screen will let you review options. At this time, it cannot be used to edit the configuration - that must be done directly in the database. text/html 2019-05-30T20:44:36+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:data-sources&rev=1559249076&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Data Sources (LEGACY) ---------- Atlas now provides the ability to review descriptive statistics about an OMOP CDM. This functionality was originally built by as part of the text/html 2019-05-30T20:45:13+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:estimation&rev=1559249113&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. ESTIMATION (LEGACY) ATLAS has the ability to perform estimation studies using the comparative cohort design. The feature can be accessed by clicking on Estimation in the left menu. text/html 2019-05-30T20:45:34+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:feedback&rev=1559249134&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Feedback (LEGACY) ---------- This will take you to the issue log for Atlas so that you can log a new issue or to search through existing issues. If you have ideas for new features or enhancements, this is also a place note these for the development community. text/html 2019-05-30T20:46:00+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:incidence_rates&rev=1559249160&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Incidence Rates (LEGACY) Incidence Rates can be generated using ATLAS by clicking on the Incidence Rate menu item and including target and outcome cohorts. Incidence rates can be generated on any of the available data sources. The incidence rate is reported as a proportion and a rate. The raw counts of people, cases, and time at risk are provided. text/html 2019-05-30T20:46:16+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:jobs&rev=1559249176&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Jobs (LEGACY) ---------- Select the “jobs” menu item to explore jobs that are running in the background for long running processes such as generating a cohort or computing cohort reports. You can use the text/html 2019-05-30T20:46:42+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:prediction&rev=1559249202&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Prediction (LEGACY) ATLAS has embedded the ability to generate prediction models using machine learning methods for precision medicine and disease interception, including: text/html 2019-05-30T20:47:03+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:profiles&rev=1559249223&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Profiles (LEGACY) Atlas provides the ability to search and explore individual patient profiles in a database. This functionality can be accessed by clicking on the profiles menu item, selecting the database of interest, and entering a patient identification number. text/html 2019-05-30T20:47:27+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:setup&rev=1559249247&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. ATLAS Setup (LEGACY) The following sections detail the process for setting up Atlas and its dependencies. Prerequisites text/html 2019-05-30T20:47:47+0000 Anonymous (anonymous@undisclosed.example.com) https://www.ohdsi.org/web/wiki/doku.php?id=documentation:software:atlas:vocabulary&rev=1559249267&do=diff IMPORTANT NOTE All ATLAS documentation has moved to GitHub. Please disregard the content below as it is legacy and kept for posterity. Vocabulary (LEGACY) Atlas provides the ability to search and explore the OMOP standardized vocabulary. This functionality was originally built as part of the