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Table of Contents
Gold Standard Phenotype Library Workgroup
Objective: To enable members of the OHDSI community to find, evaluate, and utilize community-validated cohort definitions for research and other activities. These “gold standard” definitions will reside in a library, the entries of which are held to specific standards of design and evaluation. These standards are what this working group is ultimately working to establish, as well as the instantiation of the library itself.
To achieve the above objective, we are focusing on the following Subtasks:
- Design: Rule-Based (Heuristic) Phenotypes
- Design: Computable (Probabilistic) Phenotypes
- Evaluation: Manual Chart Review / Annotations
- Evaluation: Automated / Algorithmic
- Library Architecture and Implementation
Each subtask has a Task Leader:
- TBD
- Juan Banda
- Seng Chan You
- Joel Swerdel
- Aaron Potvien
All Members:
- Aaron Potvien (Lead)
- Anastasios Siapos
- Andrew Williams
- Anna Ostropolets
- Jeff Ratto
- Jill Hardin
- Joel Swerdel
- Jon Duke
- Juan Banda
- Kimberly Houston
- Kristin Kostka
- Luke Rasmussen
- Marla Gorges
- Matt Spotnitz
- Sarah Seager
- Seng Chan You
- Trey Schneider
- Vojtech Huser
Next Meeting:
Tuesday (5/7) from 10-11am EST.
Minutes:
https://goo.gl/hiEHWM
Meeting Link:
https://gatech.webex.com/gatech/j.php?MTID=mdd4af3e9b84212fc7df3eb0150703df5
Audio Connection:
+1-415-655-0001 US TOLL
Access Code:
739 712 554
WG Presentations
Jan 15, 2019
Aaron Potvien - Gold Standard Phenotype Library
Jan 16, 2019
Seng Chan You - Clinical Narrative Review
Joel Swerdel - Phenotype Algorithm Validation
Jan 29, 2019
Juan Banda - Computable Phenotype Design
Feb 12, 2019
Aaron Potvien - Library Architecture and Implementation
Mar 26, 2019
Juan Banda - FAIR Principles
Aaron Potvien - Library Architecture and Implementation: Progress Update and Next Steps
Apr 2, 2019
Aaron Potvien - Community Call Progress Update
Overview (UNDER DEVELOPMENT)
This library serves as a resource for validated, peer-revied “Gold Standard” phenotypes. Below is a list of available phenotypes and the links to their respective pages. In addition to the phenotype definition itself, performance metrics are available for multiple sites which describe how well the algorithm performed. Requirements for induction into this library are available at the bottom of this page.
Available Phenotypes
- …
- [Others]
Wish List – Requests for additional validated phenotypes from the community
- Dementia
- Obesity
- …
- (Others)
Submission Requirements
Do you have a phenotype that should be an OHDSI Gold Standard Phenotype? Please enter your submission.
Once submitted, the definition will be reviewed by the OHDSI Phenotype Evaluation Group, and updates will be posted to the forums.