Differences

This shows you the differences between two versions of the page.

--- projects:workgroups:phenotyping [2014/11/19 14:09] – jbanda
+++ projects:workgroups:phenotyping [2015/10/15 17:49] (current) – [Phenotyping workgroup] jbanda
@@ Line 3: / Line 3: @@
 <WRAP box justify round>
-**Objectives:**
+**Objective:**
-**Project Leads:**  [[http://ohdsi.org/who-we-are/collaborators/martijn-schuemie/|Martijn Schuemie, PhD]],[[http://ohdsi.org/who-we-are/collaborators/marc-suchard/|Marc Suchard, MD, PhD]]
+To build and evaluate a computational pipeline for electronic phenotyping -- which defines criteria to algorithmically select sets of patients based on stored clinical data -- in the OHDSI project. Our approach for learning statistical models of clinical phenotypes is called XPRESS, which stands for eXtraction of Phenotypes from clinical REcords using Silver Standards.
+**Project Leads:**
+[[http://ohdsi.org/who-we-are/collaborators/nigam-shah/|Nigam Shah, MBBS, PhD]]
 **The plan:**
@@ Line 16: / Line 18: @@
   * Oct 2015: Decide the approach to use in OHDSI
-**Levels of membership/commitment:**
+**The Participants:**
-  * Prioritizing the list of phenotypes to build models for
+  * Juan Banda
-  * Apply a trained model at your site and assess performance (i.e. examine portability)
+  * Vibhu Agarwal
-  * Run the XPRESS pipeline, and build models for a set of phenotypes.
+  * George Hripsack (+ Barnett Chiu, Sunny Chang)
-  * Get in the guts of the pipeline, mess with feature engineering, etc.
+  * Nicholas Tatonetti (+ Alexandre Yahi)
-  * Try different approaches (models for episodic events)
+  * Jon Duke (+ Saeed Malas)
-**The commitments (all tentative, please think about finalizing):**
+**Start Date:** January 2015.
-**George Hripsack (+ Barnett Chiu, Sunny Chang):**
+**Repository:** https://github.com/OHDSI/Aphrodite
-  * Apply a trained model from other sites.
-  * Run XPRESS for new phenotypes.
-**Nicholas Tatonetti (+ Alexandre Yahi)**
+**WG Minutes and Agendas: **
-  * Prioritizing phenotypes
-  * Applying a trained model from other sites
-**Jon Duke (+ need name)**
+https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing
-  * Apply a trained model from other sites
-  * Run XPRES to build new models
-**[thinking about availability]**
-  * Tiffany Callahan (UC Denver, biostats)
-  * Daniella Meeker (Cheryl Chiu)
-**Start Date:** January 2015.
+**WG Video Call Recording: **
-**Repository:**  TBD
+[[https://bluejeans.com/s/8GMK/|October 15th, 2015]] \\
+[[https://bluejeans.com/s/8GMJ/|October 1st, 2015]] \\
+[[https://bluejeans.com/s/8AwP/|September 17th, 2015]]
-**WG Minutes:** Need to find a good place
-**WG Agendas:** Need to find a good place
 </WRAP>
@@ Line 55: / Line 46: @@
 ==== Meetings ====
-Schedule: Ad hoc
+Schedule: Every 2nd week on Thursday • from September 17, 2015 • 9 a.m. PDT / 1 hr
+To join the Meeting:
+[[https://bluejeans.com/286365503]]
+To join via Browser:
+[[https://bluejeans.com/286365503/browser]]
+To join with Lync:
+[[https://bluejeans.com/286365503/lync]]
+To join via Cisco Jabber Video:
+[[https://bluejeans.com/286365503/jabber]]
-Call in Number: Need to add
+To join via Room System:
+Video Conferencing System: bjn.vc -or- 199.48.152.152
+Meeting ID: 286365503
-Attendee access code: Need to add
+To join via Phone:\\
+) Dial:\\
++1 408 740 7256\\
++1 888 240 2560(US Toll Free)\\
++1 408 317 9253(Alternate Number) - (see all numbers - http://bluejeans.com/numbers) \\
+) Enter Conference ID: 286365503 \\
 === Minutes and Agendas ===
-To add
+https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing
 === Discussions ===