projects:workgroups:phenotyping
This is an old revision of the document!
Phenotyping workgroup
Objectives:
Project Leads: Nigam Shah, MBBS, PhD
The plan:
- Jan 2015: final XPRESS pipeline ready
- March 2015: 10 models built
- May 2015: Test portability of 10 models
- July 2015: Run the XPRESS vs. “queries” comparison at a non-stanford site.
- Oct 2015: Decide the approach to use in OHDSI
Levels of membership/commitment:
- Prioritizing the list of phenotypes to build models for
- Apply a trained model at your site and assess performance (i.e. examine portability)
- Run the XPRESS pipeline, and build models for a set of phenotypes.
- Get in the guts of the pipeline, mess with feature engineering, etc.
- Try different approaches (models for episodic events)
The commitments (all tentative, please think about finalizing):
George Hripsack (+ Barnett Chiu, Sunny Chang):
- Apply a trained model from other sites.
- Run XPRESS for new phenotypes.
Nicholas Tatonetti (+ Alexandre Yahi)
- Prioritizing phenotypes
- Applying a trained model from other sites
Jon Duke (+ need name)
- Apply a trained model from other sites
- Run XPRES to build new models
[thinking about availability]
- Tiffany Callahan (UC Denver, biostats)
- Daniella Meeker (Cheryl Chiu)
Start Date: January 2015.
Repository: TBD
WG Minutes: Need to find a good place
WG Agendas: Need to find a good place
Meetings
Schedule: Ad hoc
Call in Number: Need to add
Attendee access code: Need to add
Minutes and Agendas
To add
Discussions
projects/workgroups/phenotyping.1416406254.txt.gz · Last modified: by jbanda
