Observational Health Data Sciences and Informatics

For a consolidated one-document version click here

• 1. Introduction
  • 1.1. Background
  • 1.2. Definition of Terms
  • 1.3. Vocabulary Representation in the CDM1.3. Vocabulary Representation in the CDM
• 2. Changes from Vocabulary Version V4
  • 2.1. Fundamental Changes
    • 2.1.1. Introduction of a Record Lifecycle
    • 2.1.2. Handling of Unambiguous Mapping
    • 2.1.3. Handling of Hierarchical Relationships between Concepts
    • 2.1.4. Changes in Table and Field Names
    • 2.1.5. Complete Code Lists
  • 2.2. Changes to the Vocabularies
    • 2.2.1. Added Vocabularies
    • 2.2.2. Added Type Concept Vocabularies
    • 2.2.3. Deprecated Vocabularies
    • 2.2.4. Changes in Individual Vocabularies
  • 2.3. Changes to Relationships
  • 2.4. Changes to Ancestry Relationships
• 3. General Structure and Use of Vocabularies
  • 3.1. Using the Vocabulary
  • 3.2. Domain Concepts
  • 3.3. Type Concepts
• 4. Vocabulary Domains
  • 4.1. Drug Domain
    • 4.1.1. Vocabularies
    • 4.1.2. Implementation of RxNorm
    • 4.1.3. Implementation of NDF-RT and VA NDF
    • 4.1.4. Implementation of ATC
    • 4.1.5. Implementation of ETC
    • 4.1.6. Implementation of FDB Indication and Contraindication
    • 4.1.7. Levels
    • 4.1.8. Mapping
  • 4.2. Condition Domain
    • 4.2.1. Vocabularies
    • 4.2.2. Relationships
    • 4.2.3. Levels
    • 4.2.4. Mapping
  • 4.3. Procedure Domain
    • 4.3.1. Vocabularies
    • 4.3.2. Relationships
    • 4.3.3. Levels
    • 4.3.4. Mapping
  • 4.4. Demographic Domain
    • 4.4.1. Vocabularies
    • 4.4.2. Implementation, Relationships, Levels and Mapping
  • 4.5. Observation Domain
    • 4.5.1. Vocabularies
    • 4.5.2. Implementation of LOINC
    • 4.5.3. Implementation of Qualitative Lab Results
    • 4.5.4. Implementation of UCUM
    • 4.5.5. Implementation of SNOMED-CT for Observations
  • 4.6. Visit Domain
    • 4.6.1. Vocabularies
    • 4.6.2. Relationships, Levels and Mapping
  • 4.7. Provider Domain
    • 4.7.1. Vocabularies, Relationships, Levels and Mapping
  • 4.8. Cost Domain
    • 4.8.1. Vocabularies, Relationships, Levels and Mapping
  • 4.9. Cohort Domain
    • 4.9.1. Vocabularies
    • 4.9.2. Implementation of Drugs of Interest
    • 4.9.3. Implementation of Health Outcomes of Interest
    • 4.9.4. Implementation of Standardized MedDRA Queries

4.10. Type Concepts 4.10.1. Vocabularies, Relationships, Levels and Mapping

5. Abbreviations 6. Appendices 6.1. Appendix A: Statistic about Concepts, Vocabularies, Classes and Levels 6.2. Appendix B: Statistics about Relationships between Concepts 6.3. Appendix C: Statistics about Mapping of Source Vocabularies 6.3.1. Coverage of code mapping in the Drug domain 6.3.2. Coverage of code mapping in the Condition domain 6.4. Appendix D: Source Vocabulary Versions and Sources 7. References