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documentation:vocabulary:mapping [2019/12/13 17:58] ptalapova ["Losses" in Mapping] |
documentation:vocabulary:mapping [2019/12/16 10:43] ptalapova |
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Examples of usage: | Examples of usage: | ||
- | ^ source concept code ^ source concept name ^ relationship ID ^ standard concept ID ^ standard concept code ^ standard concept name ^ | + | ^ source concept code ^ source concept name ^ relationship ID ^ standard concept ID ^ standard concept code ^ standard concept name ^ |
- | ^ Single “Maps to” for a mapping to an Equivalent Standard Concept |||||| | + | ^ Single “Maps to” for mapping to an Equivalent Standard Concept |||||| |
- | | M65.3 | Trigger finger | Maps to | 763891 | 448251000124102 | Trigger finger | | + | | M65.3 | Trigger finger | Maps to | 763891 | 448251000124102 | Trigger finger | |
- | | A06 | Amebiasis | Maps to | 438959 | 111910009 | Amebic infection | | + | | A06 | Amebiasis | Maps to | 438959 | 111910009 | Amebic infection | |
^ Single “Maps to” for mapping to a Non-equivalent Standard Concept |||||| | ^ Single “Maps to” for mapping to a Non-equivalent Standard Concept |||||| | ||
- | | D46.5 | Refractory anaemia with multi-lineage dysplasia | Maps to | 4003185 | 109996008 | Refractory anemia | | + | | D46.5 | Refractory anaemia with multi-lineage dysplasia | Maps to | 4003185 | 109996008 | Refractory anemia | |
- | | M81.50 | Idiopathic osteoporosis, multiple sites | Maps to | 81390 | 3345002 | Idiopathic osteoporosis | | + | | M81.50 | Idiopathic osteoporosis, multiple sites | Maps to | 81390 | 3345002 | Idiopathic osteoporosis | |
- | ^ Multiple “Maps to” for a mapping to several Standard Concepts fully covering semantic space of a Source Concept |||||| | + | ^ Multiple “Maps to” for mapping to several Standard Concepts fully covering semantic space of a Source Concept |||||| |
- | | S61.1 | Open wound of finger(s) with damage to nail | Maps to | 4054063 | 125653000 | Open wound of finger | | + | | S61.1 | Open wound of finger(s) with damage to nail | Maps to | 4054063 | 125653000 | Open wound of finger | |
- | | ::: | ::: | Maps to | 4167909 | 275320004 | Injury of nail | | + | | ::: | ::: | Maps to | 4167909 | 275320004 | Injury of nail | |
- | | I26.0 | Pulmonary embolism with mention of acute cor pulmonale | Maps to | 440417 | 59282003 | Pulmonary embolism | | + | | I26.0 | Pulmonary embolism with mention of acute cor pulmonale | Maps to | 440417 | 59282003 | Pulmonary embolism | |
- | | ::: | ::: | Maps to | 312927 | 49584005 | Acute cor pulmonale | | + | | ::: | ::: | Maps to | 312927 | 49584005 | Acute cor pulmonale | |
- | | G44.311 | Acute post-traumatic headache, intractable | Maps to | 42535403 | 290431000119101 | Intractable headache following trauma | | + | | G44.311 | Acute post-traumatic headache, intractable | Maps to | 42535403 | 290431000119101 | Intractable headache following trauma | |
- | | ::: | ::: | Maps to | 44782681 | 122751000119105 | Acute posttraumatic headache | | + | | ::: | ::: | Maps to | 44782681 | 122751000119105 | Acute posttraumatic headache | |
^ Multiple “Maps to” for mapping to several Standard Concepts partially covering semantic space of a Source Concept |||||| | ^ Multiple “Maps to” for mapping to several Standard Concepts partially covering semantic space of a Source Concept |||||| | ||
- | | V01.11 | Pedestrian on roller-skates injured in collision with pedal cycle in traffic accident | Maps to | 442247 | 215142005 | Pedal cycle accident involving collision between pedal cycle and pedestrian, pedestrian injured | | + | | V01.11 | Pedestrian on roller-skates injured in collision with pedal cycle in traffic accident | Maps to | 442247 | 215142005 | Pedal cycle accident involving collision between pedal cycle and pedestrian, pedestrian injured | |
- | | ::: | ::: | Maps to | 441188 | 32906002 | Victim, pedestrian in vehicular AND/OR traffic accident | | + | | ::: | ::: | Maps to | 441188 | 32906002 | Victim, pedestrian in vehicular AND/OR traffic accident | |
- | | T36.1x4 | Poisoning by cephalosporins and other beta-lactam antibiotics, undetermined | Maps to | 4303975 | 419347003 | Poisoning by antibacterial drug | | + | | T36.1x4 | Poisoning by cephalosporins and other beta-lactam antibiotics, undetermined | Maps to | 4303975 | 419347003 | Poisoning by antibacterial drug | |
- | | ::: | ::: | Maps to | 4055774 | 242975003 | Poisoning of undetermined intent by drug | | + | | ::: | ::: | Maps to | 4055774 | 242975003 | Poisoning of undetermined intent by drug | |
=== "Maps to value" Relationships === | === "Maps to value" Relationships === | ||
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- Personal history of medical treatment or procedure | - Personal history of medical treatment or procedure | ||
- Status of a transplant/prosthesis presence | - Status of a transplant/prosthesis presence | ||
- | - Persons'encountering procedures, not carried out | + | - Patient encounter procedures, not carried out |
Examples of usage: | Examples of usage: | ||
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This is possible due to the following reasons: | This is possible due to the following reasons: | ||
- | * Vague formulation of a Source Concept | + | | source concept code | source concept name | relationship ID | standard concept ID | standard concept code | standard concept name | |
- | * Source Concept excessive granularity | + | ^ 1. Vague formulation of a Source Concept |||||| |
- | * Classification difference between Source and Standard Vocabularies | + | | M99.9 | Biomechanical lesion, unspecified | Maps to | 4244662 | 928000 | Disorder of musculoskeletal system | |
+ | | A28.9 | Zoonotic bacterial disease, unspecified | Maps to | 432545 | 87628006 | Bacterial infectious disease | | ||
+ | ^ 2. Source Concept excessive granularity |||||| | ||
+ | | B33.4 | Hantavirus (cardio-)pulmonary syndrome [HPS] [HCPS] | Maps to | 441784 | 359761005 | Disease due to Hantavirus | | ||
+ | | I12.9 | Hypertensive renal disease without renal failure | Maps to | 201313 | 38481006 | Hypertensive renal disease | | ||
+ | | S06.4x9 | Epidural hemorrhage with loss of consciousness of unspecified duration | Maps to | 4306943 | 82999001 | Epidural hemorrhage | | ||
+ | | ::: | ::: | Maps to | 372448 | 419045004 | Loss of consciousness | | ||
+ | | S35.415 | Laceration of left renal vein | Maps to | 4124868 | 234084003 | Venous laceration | | ||
+ | | ::: | ::: | Maps to | 195125 | 5753006 | Injury of renal vein | | ||
+ | ^ 3. Classification difference between Source and Standard Vocabularies |||||| | ||
+ | | I48 | Atrial fibrillation and flutter | Maps to | 4068155 | 17366009 | Atrial arrhythmia | | ||
+ | | G06.0 | Intracranial abscess and granuloma | Maps to | 4181187 | 363176004 | Inflammatory disorder of head | | ||
+ | | J38.0 | Paralysis of vocal cords and larynx | Maps to | 4233244 | 89927005 | Paralysis of larynx | | ||
+ | | U82.1 | Resistance to methicillin | Maps to | 37017452 | 713728002 | Drug resistance to antibacterial agent | | ||
**Other possible issues that one could encounter:** | **Other possible issues that one could encounter:** | ||
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* Code irrelevant to the patient, for example, ICD-9-CM V65 “Other persons seeking consultation” | * Code irrelevant to the patient, for example, ICD-9-CM V65 “Other persons seeking consultation” | ||
* Source code is ill-defined, for example, ICD-9-CM 799 “Other ill-defined and unknown causes of morbidity and mortality” | * Source code is ill-defined, for example, ICD-9-CM 799 “Other ill-defined and unknown causes of morbidity and mortality” | ||
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- | === CONDITION MAPPING ALGORITHM === | ||
- | {{ :documentation:vocabulary:mapping_of_concepts_2_1_5_.png?600 |}} | ||
=== RULES FOR CONDITION MAPPING === | === RULES FOR CONDITION MAPPING === | ||
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**Conditions resulting from the use of Devices.** | **Conditions resulting from the use of Devices.** | ||
Adverse or other outcomes of the exposure to a device are mapped to 473023007 "Complication associated with device and with another "Maps to value" relationship to the device itself, if possible. For example, ICD10 Y73.0 concept_id 45590664 "Gastroenterology and urology devices associated with adverse incidents, diagnostic and monitoring devices" has a "Maps to value" link to 45767866 "Gastro-urological device". | Adverse or other outcomes of the exposure to a device are mapped to 473023007 "Complication associated with device and with another "Maps to value" relationship to the device itself, if possible. For example, ICD10 Y73.0 concept_id 45590664 "Gastroenterology and urology devices associated with adverse incidents, diagnostic and monitoring devices" has a "Maps to value" link to 45767866 "Gastro-urological device". | ||
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+ | === CONDITION MAPPING ALGORITHM === | ||
+ | {{ :documentation:vocabulary:mapping_of_concepts_2_1_5_.png?600 |}} | ||
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