projects:workgroups:phenotyping
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projects:workgroups:phenotyping [2014/11/19 14:14] jbanda |
projects:workgroups:phenotyping [2015/10/15 17:48] jbanda [Phenotyping workgroup] |
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| <WRAP box justify round> | <WRAP box justify round> | ||
| - | **Objectives:** | + | **Objective:** |
| - | Identifying a set of patients: | + | To build and evaluate a computational pipeline for electronic phenotyping -- which defines criteria to algorithmically select sets of patients based on stored clinical data -- in the OHDSI project. Our approach for learning statistical models of clinical phenotypes is called XPRESS, which stands for eXtraction of Phenotypes from clinical REcords using Silver Standards. |
| - | * For observational research | + | |
| - | * For clinical trial eligibility, | + | |
| - | * As Numerators or denominators of quality metrics | + | |
| - | * For whom a decision support reminder should “fire” | + | |
| - | * Who are “similar” based on whom a clinical decision should be based. | + | |
| - | * Who progress along similar paths | + | |
| - | + | ||
| - | The main problems: | + | |
| - | * The need for a gold standard | + | |
| - | * Poor portability across sites and studies | + | |
| - | + | ||
| - | **Project Leads:** [[http://ohdsi.org/who-we-are/collaborators/nigam-shah/|Nigam Shah, MBBS, PhD]] | + | |
| + | **Project Leads:** | ||
| + | [[http://ohdsi.org/who-we-are/collaborators/nigam-shah/|Nigam Shah, MBBS, PhD]] | ||
| **The plan:** | **The plan:** | ||
| Line 28: | Line 18: | ||
| * Oct 2015: Decide the approach to use in OHDSI | * Oct 2015: Decide the approach to use in OHDSI | ||
| - | **Levels of membership/commitment:** | + | **The Participants:** |
| - | * Prioritizing the list of phenotypes to build models for | + | * Juan Banda |
| - | * Apply a trained model at your site and assess performance (i.e. examine portability) | + | * Vibhu Agarwal |
| - | * Run the XPRESS pipeline, and build models for a set of phenotypes. | + | * George Hripsack (+ Barnett Chiu, Sunny Chang) |
| - | * Get in the guts of the pipeline, mess with feature engineering, etc. | + | * Nicholas Tatonetti (+ Alexandre Yahi) |
| - | * Try different approaches (models for episodic events) | + | * Jon Duke (+ Saeed Malas) |
| - | **The commitments (all tentative, please think about finalizing):** | + | **Start Date:** January 2015. |
| - | **George Hripsack (+ Barnett Chiu, Sunny Chang):** | + | **Repository:** https://github.com/OHDSI/Aphrodite |
| - | * Apply a trained model from other sites. | + | |
| - | * Run XPRESS for new phenotypes. | + | |
| - | **Nicholas Tatonetti (+ Alexandre Yahi)** | + | **WG Minutes and Agendas: ** |
| - | * Prioritizing phenotypes | + | |
| - | * Applying a trained model from other sites | + | |
| - | **Jon Duke (+ need name)** | + | https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing |
| - | * Apply a trained model from other sites | + | |
| - | * Run XPRES to build new models | + | |
| - | + | ||
| - | **[thinking about availability]** | + | |
| - | * Tiffany Callahan (UC Denver, biostats) | + | |
| - | * Daniella Meeker (Cheryl Chiu) | + | |
| - | **Start Date:** January 2015. | + | **WG Video Call Recording: ** |
| - | **Repository:** TBD | + | [[https://bluejeans.com/s/8GMK/|October 15th, 2015]] |
| + | [[https://bluejeans.com/s/8GMJ/|October 1st, 2015]] | ||
| + | [[https://bluejeans.com/s/8AwP/|September 17th, 2015]] | ||
| - | **WG Minutes:** Need to find a good place | ||
| - | |||
| - | **WG Agendas:** Need to find a good place | ||
| </WRAP> | </WRAP> | ||
| Line 67: | Line 46: | ||
| ==== Meetings ==== | ==== Meetings ==== | ||
| - | Schedule: Ad hoc | + | Schedule: Every 2nd week on Thursday • from September 17, 2015 • 9 a.m. PDT / 1 hr |
| + | |||
| + | To join the Meeting: | ||
| + | [[https://bluejeans.com/286365503]] | ||
| + | |||
| + | To join via Browser: | ||
| + | [[https://bluejeans.com/286365503/browser]] | ||
| + | |||
| + | To join with Lync: | ||
| + | [[https://bluejeans.com/286365503/lync]] | ||
| + | |||
| + | To join via Cisco Jabber Video: | ||
| + | [[https://bluejeans.com/286365503/jabber]] | ||
| - | Call in Number: Need to add | + | To join via Room System: |
| + | Video Conferencing System: bjn.vc -or- 199.48.152.152 | ||
| + | Meeting ID: 286365503 | ||
| - | Attendee access code: Need to add | + | To join via Phone:\\ |
| + | 1) Dial:\\ | ||
| + | +1 408 740 7256\\ | ||
| + | +1 888 240 2560(US Toll Free)\\ | ||
| + | +1 408 317 9253(Alternate Number) - (see all numbers - http://bluejeans.com/numbers) \\ | ||
| + | 2) Enter Conference ID: 286365503 \\ | ||
| === Minutes and Agendas === | === Minutes and Agendas === | ||
| - | To add | + | https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing |
| === Discussions === | === Discussions === | ||
projects/workgroups/phenotyping.txt · Last modified: 2015/10/15 17:49 by jbanda
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