projects:workgroups:wg_meeting_01062016
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projects:workgroups:wg_meeting_01062016 [2016/01/29 22:42] anu_gururaj |
projects:workgroups:wg_meeting_01062016 [2016/03/07 22:48] (current) anu_gururaj |
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| * cTAKES is being run on clinical notes programmatically. Alex will present the minimal model in the next meeting. | * cTAKES is being run on clinical notes programmatically. Alex will present the minimal model in the next meeting. | ||
| - Aggregate and share note-type metadata from various sources: Karthik | - Aggregate and share note-type metadata from various sources: Karthik | ||
| - | * LOINC note type mapping would be a very useful resource. We should generate hierarchical representation of note-types as an ontology. Karthink will present his work to date at the next meeting. | + | * LOINC note type mapping would be a very useful resource. We should generate hierarchical representation of note-types as an ontology. Karthik will present his work to date at the next meeting. |
| * Existing ontology for note types to be shared : Vanderbilt (Hua) and Regenstrief (Jon) | * Existing ontology for note types to be shared : Vanderbilt (Hua) and Regenstrief (Jon) | ||
| - Simple search set up for MT samples: MinPresentation | - Simple search set up for MT samples: MinPresentation | ||
| - | * Presentation | + | * Presentation {{:projects:workgroups:clinical_text_search_engine_01_06.pdf|}} |
| * The interface being developed should present a summary with visualization for patients/notes. | * The interface being developed should present a summary with visualization for patients/notes. | ||
| * We will add Boolean query options to improve the search | * We will add Boolean query options to improve the search | ||
| Line 37: | Line 37: | ||
| ===Action Items=== | ===Action Items=== | ||
| - | - | + | - Minimal Model Presentation - Alex |
| - | - IRB for use of clinical text | + | - Note-type mapping Presentation - Karthink |
| - | - Clinical text data storage and representation schema | + | - Share existing ontologies from Vanderbilt (Hua) and Regenstrief (Jon) |
| - | - NLP tools/pipelines for ETL | + | - Share strategies for combining data from different searches - Jon |
| - | - Use cases, e.g, phenotyping for cohort selection using NLP outputs | + | - Report on WG for commenting - Hua |
| - | - Discussion | + | - Wrappers for cTAKES and Metamap - Min |
| + | - Improvements to search engine set up using MT samples - Min | ||
| + | - Textual Data Representation - Discussion | ||
projects/workgroups/wg_meeting_01062016.1454107333.txt.gz · Last modified: 2016/01/29 22:42 by anu_gururaj
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