documentation:oncology:meeting_notes_2019_aug-27
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documentation:oncology:meeting_notes_2019_aug-27 [2019/08/28 10:52] mgurley |
documentation:oncology:meeting_notes_2019_aug-27 [2019/08/28 11:18] mgurley |
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| **Topics** | **Topics** | ||
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| + | * Seng Chan You from Ajou University told the group about the code he and his colleagues have developed to extract oncology drug regimens from OMOP data. See here: https://github.com/ABMI/treatmentCycleExtraction | ||
| * We reviewed the vocabulary tasks from the workshop. | * We reviewed the vocabulary tasks from the workshop. | ||
| * Add the EPISODE table and field concepts to the vocabulary for metadata field reference. Like ‘episode.episode_id’. See here: https://github.com/OHDSI/OncologyWG/issues/66 | * Add the EPISODE table and field concepts to the vocabulary for metadata field reference. Like ‘episode.episode_id’. See here: https://github.com/OHDSI/OncologyWG/issues/66 | ||
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| * Fix missing leading zeros in the concept_codes for Treatment NAACCR item codes. See here: https://github.com/OHDSI/OncologyWG/issues/60 | * Fix missing leading zeros in the concept_codes for Treatment NAACCR item codes. See here: https://github.com/OHDSI/OncologyWG/issues/60 | ||
| * The 'NAACCR Proc Schema' entries do not have all the necessary relationships to ICDO codes via 'Proc Schema to ICDO' See here: https://github.com/OHDSI/OncologyWG/issues/60 | * The 'NAACCR Proc Schema' entries do not have all the necessary relationships to ICDO codes via 'Proc Schema to ICDO' See here: https://github.com/OHDSI/OncologyWG/issues/60 | ||
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| * We made a decision on a convention for making a non-ambiguous reference between a 'Disease Episode' and 'Treatment. Convention: Populate parent_id of a ‘Treatment Episode’ with the ‘Disease Episode’ it is 'treating'. | * We made a decision on a convention for making a non-ambiguous reference between a 'Disease Episode' and 'Treatment. Convention: Populate parent_id of a ‘Treatment Episode’ with the ‘Disease Episode’ it is 'treating'. | ||
| * For the symposium, we decided to skip all the ICDO codes that participate in multiple NAACCR schemas. Until we can create a mapping table to be used for handling ambiguous ICDO site/histology combinations present in multiple schemas. See here: https://github.com/OHDSI/OncologyWG/issues/59. See here for SQL to identify the ambiguous ICDO Site/Histology combinations: https://github.com/OHDSI/OncologyWG/blob/master/documentation/debug_naaccr_ambiguites.sql | * For the symposium, we decided to skip all the ICDO codes that participate in multiple NAACCR schemas. Until we can create a mapping table to be used for handling ambiguous ICDO site/histology combinations present in multiple schemas. See here: https://github.com/OHDSI/OncologyWG/issues/59. See here for SQL to identify the ambiguous ICDO Site/Histology combinations: https://github.com/OHDSI/OncologyWG/blob/master/documentation/debug_naaccr_ambiguites.sql | ||
documentation/oncology/meeting_notes_2019_aug-27.txt · Last modified: 2019/08/28 14:51 by mgurley
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