documentation:vocabulary
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documentation:vocabulary [2015/05/25 13:23] lee |
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| - | ===== Standardized Vocabulary V5.0 ===== | + | ===== OMOP Standardized Vocabulary V5.0 ===== |
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| + | Thank you for visiting the Vocabulary wiki! All documentation for the vocabulary has now moved to the[[https://github.com/OHDSI/Vocabulary-v5.0/wiki|OHDSI GitHub wiki]]. Come join us over there! | ||
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| + | The below is outdated information and will be removed at a later time | ||
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| + | ---- | ||
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| + | ---- | ||
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| + | ===== Standardized Vocabularies ===== | ||
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| + | * [[documentation:vocabulary:Introduction]] | ||
| + | * [[documentation:vocabulary:Background]] | ||
| + | * [[documentation:vocabulary:Principles]] | ||
| + | * [[documentation:vocabulary:Definitions of Terms]] | ||
| + | * [[documentation:vocabulary:Changes from Version 4]] | ||
| + | * [[documentation:vocabulary:General Structure and Use]] | ||
| + | * [[documentation:vocabulary:Availability, License, Download]] | ||
| + | * [[documentation:vocabulary:Domains and Vocabularies]] | ||
| + | * [[documentation:vocabulary:Standard, Classification and Source Concepts]] | ||
| + | * [[documentation:vocabulary:Mapping]] | ||
| + | * [[documentation:vocabulary:Data ETL]] | ||
| + | * [[documentation:vocabulary:Vocabulary statistics]] | ||
| + | * [[documentation:vocabulary:Domains]] | ||
| + | * [[documentation:vocabulary:condition|Condition]] | ||
| + | * [[documentation:vocabulary:currency|Currency]] | ||
| + | * [[documentation:vocabulary:device|Device]] | ||
| + | * [[documentation:vocabulary:drug|Drug]] | ||
| + | * [[documentation:vocabulary:ethnicity|Ethnicity]] | ||
| + | * [[documentation:vocabulary:gender|Gender]] | ||
| + | * [[documentation:vocabulary:measurement|Measurement]] | ||
| + | * [[documentation:vocabulary:meas_value|Measurement Value]] | ||
| + | * [[documentation:vocabulary:meas_value_operator|Measurement Value Operator]] | ||
| + | * [[documentation:vocabulary:metadata|Metadata]] | ||
| + | * [[documentation:vocabulary:modifier|Modifier]] | ||
| + | * [[documentation:vocabulary:observation|Observation]] | ||
| + | * [[documentation:vocabulary:place_of_service|Place of Service]] | ||
| + | * [[documentation:vocabulary:procedure|Procedure]] | ||
| + | * [[documentation:vocabulary:provider_specialty|Provider Specialty]] | ||
| + | * [[documentation:vocabulary:race|Race]] | ||
| + | * [[documentation:vocabulary:relationship|Relationship]] | ||
| + | * [[documentation:vocabulary:revenue_code|Revenue Code]] | ||
| + | * [[documentation:vocabulary:route|Route Of Administration]] | ||
| + | * [[documentation:vocabulary:specimen|Specimen]] | ||
| + | * [[documentation:vocabulary:spec_anatomic_site|Specimen Anatomic Site]] | ||
| + | * [[documentation:vocabulary:spec_disease_status|Specimen Disease Status]] | ||
| + | * [[documentation:vocabulary:type_concept|Type Concept]] | ||
| + | * [[documentation:vocabulary:unit|Unit]] | ||
| + | * [[documentation:vocabulary:visit|Visit]] | ||
| + | * [[documentation:vocabulary:combination_domains|Combination Domains]] | ||
| + | * [[documentation:vocabulary:Vocabularies]] All vocabularies listed exist in the OHDSI vocabulary at Athena. For some of them, the documentation is not yet provided (in red) | ||
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| + | ^ Name ^ Description ^ | ||
| + | | [[documentation:vocabulary:abms|ABMS]] | Provider Specialty (American Board of Medical Specialties) | | ||
| + | | [[documentation:vocabulary:amt|AMT]] | Australian Medicines Terminology (NEHTA) | | ||
| + | | [[documentation:vocabulary:apc|APC]] | Ambulatory Payment Classification (CMS) | | ||
| + | | [[documentation:vocabulary:atc|ATC]] | WHO Anatomic Therapeutic Chemical Classification | | ||
| + | | [[documentation:vocabulary:bdpm|BDPM]] | Public Database of Medications (Social-Sante) | | ||
| + | | [[documentation:vocabulary:cap|CAP]] | CAP electronic Cancer Checklists (College of American Pathologists) | | ||
| + | | [[documentation:vocabulary:cdt|CDT]] | Current Dental Terminology (ADA) | | ||
| + | | CGI | Cancer Genome Interpreter (Pompeu Fabra University) | | ||
| + | | [[documentation:vocabulary:ciel|CIEL]] | Columbia International eHealth Laboratory (Columbia University) | | ||
| + | | [[documentation:vocabulary:cim10|CIM10]] | International Classification of Diseases, Tenth Revision, French Edition | | ||
| + | | CIViC | Clinical Interpretation of Variants in Cancer (civicdb.org) | | ||
| + | | ClinVar | ClinVar (NCBI) | | ||
| + | | [[documentation:vocabulary:cms_place_of_service|CMS Place of Service]] | Place of Service Codes for Professional Claims (CMS) | | ||
| + | | [[documentation:vocabulary:cohort|Cohort]] | Legacy OMOP HOI or DOI cohort | | ||
| + | | [[documentation:vocabulary:cpt4|CPT4]] | Current Procedural Terminology version 4 (AMA) | | ||
| + | | CTD | Comparative Toxicogenomic Database | | ||
| + | | [[documentation:vocabulary:currency|Currency]] | International Currency Symbol (ISO 4217) | | ||
| + | | [[documentation:vocabulary:cvx|CVX]] | CDC Vaccine Administered CVX (NCIRD) | | ||
| + | | [[documentation:vocabulary:da_france|DA_France]] | Disease Analyzer France (IQVIA) | | ||
| + | | [[documentation:vocabulary:dm+d|dm+d]] | Dictionary of Medicines and Devices (NHS) | | ||
| + | | [[documentation:vocabulary:dpd|DPD]] | Drug Product Database (Health Canada) | | ||
| + | | [[documentation:vocabulary:drg|DRG]] | Diagnosis-related group (CMS) | | ||
| + | | EDI | Korean EDI | | ||
| + | | [[documentation:vocabulary:ephmra_atc|EphMRA ATC]] | Anatomical Classification of Pharmaceutical Products (EphMRA) | | ||
| + | | [[documentation:vocabulary:episode|Episode]] | OMOP Episode Type | | ||
| + | | [[documentation:vocabulary:etc|ETC]] | Enhanced Therapeutic Classification (FDB) | | ||
| + | | [[documentation:vocabulary:ethnicity|Ethnicity]] | OMOP Ethnicity | | ||
| + | | [[documentation:vocabulary:gcn_seqno|GCN_SEQNO]] | Clinical Formulation ID (FDB) | | ||
| + | | [[documentation:vocabulary:gemscript|Gemscript]] | Gemscript (Resip) | | ||
| + | | [[documentation:vocabulary:gender|Gender]] | OMOP Gender | | ||
| + | | [[documentation:vocabulary:ggr|GGR]] | Commented Drug Directory (BCFI) | | ||
| + | | [[documentation:vocabulary:gpi|GPI]] | Medi-Span Generic Product Identifier (Wolters Kluwer Health) | | ||
| + | | [[documentation:vocabulary:grr|GRR]] | Global Reference Repository (IQVIA) | | ||
| + | | [[documentation:vocabulary:hcpcs|HCPCS]] | Healthcare Common Procedure Coding System (CMS) | | ||
| + | | [[documentation:vocabulary:hemonc|HemOnc]] | HemOnc | | ||
| + | | [[documentation:vocabulary:hes_specialty|HES Specialty]] | Hospital Episode Statistics Specialty (NHS) | | ||
| + | | HGNC | Human Gene Nomenclature (European Bioinformatics Institute) | | ||
| + | | [[documentation:vocabulary:icd10|ICD10]] | International Classification of Diseases, Tenth Revision (WHO) | | ||
| + | | [[documentation:vocabulary:icd10cm|ICD10CM]] | International Classification of Diseases, Tenth Revision, Clinical Modification (NCHS) | | ||
| + | | [[documentation:vocabulary:icd10cn|ICD10CN]] | International Classification of Diseases, Tenth Revision, Chinese Edition | | ||
| + | | [[documentation:vocabulary:icd10gm|ICD10GM]] | International Classification of Diseases, Tenth Revision, German Modification (DIMDI) | | ||
| + | | [[documentation:vocabulary:icd10pcs|ICD10PCS]] | ICD-10 Procedure Coding System (CMS) | | ||
| + | | [[documentation:vocabulary:icd9cm|ICD9CM]] | International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS) | | ||
| + | | [[documentation:vocabulary:icd9proc|ICD9Proc]] | International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 3 (NCHS) | | ||
| + | | ICD9ProcCN | International Classification of Diseases, Ninth Revision, Chinese Edition, Procedures | | ||
| + | | [[documentation:vocabulary:icdo3|ICDO3]] | International Classification of Diseases for Oncology, Third Edition (WHO) | | ||
| + | | [[documentation:vocabulary:indication|Indication]] | Indications and Contraindications (FDB) | | ||
| + | | [[documentation:vocabulary:isbt|ISBT]] | Information Standard for Blood and Transplant 128 Product (ICCBBA) | | ||
| + | | [[documentation:vocabulary:isbt_attribute|ISBT Attribute]] | Information Standard for Blood and Transplant 128 Product Attribute (ICCBBA) | | ||
| + | | JAX | The Clinical Knowledgebase (The Jackson Laboratory) | | ||
| + | | [[documentation:vocabulary:jmdc|JMDC]] | Japan Medical Data Center Drug Code (JMDC) | | ||
| + | | KCD7 | Korean Classification of Diseases, 7th Revision | | ||
| + | | [[documentation:vocabulary:kdc|KDC]] | Korean Drug Code (HIRA) | | ||
| + | | KNHIS | Korean National Health Information System | | ||
| + | | [[documentation:vocabulary:loinc|LOINC]] | Logical Observation Identifiers Names and Codes (Regenstrief Institute) | | ||
| + | | [[documentation:vocabulary:lpd_australia|LPD_Australia]] | Longitudinal Patient Data Australia (IQVIA) | | ||
| + | | [[documentation:vocabulary:lpd_belgium|LPD_Belgium]] | Longitudinal Patient Data Belgium (IQVIA) | | ||
| + | | [[documentation:vocabulary:mdc|MDC]] | Major Diagnostic Categories (CMS) | | ||
| + | | [[documentation:vocabulary:meddra|MedDRA]] | Medical Dictionary for Regulatory Activities (MSSO) | | ||
| + | | [[documentation:vocabulary:medicare_specialty|Medicare Specialty]] | Medicare provider/supplier specialty codes (CMS) | | ||
| + | | MEDRT | Medication Reference Terminology MED-RT (VA) | | ||
| + | | [[documentation:vocabulary:mesh|MeSH]] | Medical Subject Headings (NLM) | | ||
| + | | [[documentation:vocabulary:mmi|MMI]] | Modernizing Medicine (MMI) | | ||
| + | | [[documentation:vocabulary:multilex|Multilex]] | Multilex (FDB) | | ||
| + | | [[documentation:vocabulary:multum|Multum]] | Cerner Multum (Cerner) | | ||
| + | | [[documentation:vocabulary:naaccr|NAACCR]] | Data Standards & Data Dictionary Volume II (NAACCR) | | ||
| + | | [[documentation:vocabulary:nccd|NCCD]] | Normalized Chinese Clinical Drug | | ||
| + | | NCIt | NCI Thesaurus (National Cancer Institute) | | ||
| + | | [[documentation:vocabulary:ndc|NDC]] | National Drug Code (FDA and manufacturers) | | ||
| + | | [[documentation:vocabulary:ndfrt|NDFRT]] | National Drug File - Reference Terminology (VA) | | ||
| + | | Nebraska Lexicon | Nebraska Lexicon | | ||
| + | | [[documentation:vocabulary:nfc|NFC]] | New Form Code (EphMRA) | | ||
| + | | [[documentation:vocabulary:nucc|NUCC]] | National Uniform Claim Committee Health Care Provider Taxonomy Code Set (NUCC) | | ||
| + | | OMOP Extension | OMOP Extension (OHDSI) | | ||
| + | | [[documentation:vocabulary:opcs4|OPCS4]] | OPCS Classification of Interventions and Procedures version 4 (NHS) | | ||
| + | | [[documentation:vocabulary:oxmis|OXMIS]] | Oxford Medical Information System (OCHP) | | ||
| + | | [[documentation:vocabulary:pcornet|PCORNet]] | National Patient-Centered Clinical Research Network (PCORI) | | ||
| + | | [[documentation:vocabulary:ppi|PPI]] | AllOfUs_PPI (Columbia) | | ||
| + | | [[documentation:vocabulary:provider|Provider]] | OMOP Provider | | ||
| + | | [[documentation:vocabulary:race|Race]] | Race and Ethnicity Code Set (USBC) | | ||
| + | | [[documentation:vocabulary:read|Read]] | NHS UK Read Codes Version 2 (HSCIC) | | ||
| + | | [[documentation:vocabulary:revenue_code|Revenue Code]] | UB04/CMS1450 Revenue Codes (CMS) | | ||
| + | | [[documentation:vocabulary:rxnorm|RxNorm]] | RxNorm (NLM) | | ||
| + | | [[documentation:international_drugs|RxNorm Extension]] | RxNorm Extension (OHDSI) | | ||
| + | | [[documentation:vocabulary:smq|SMQ]] | Standardised MedDRA Queries (MSSO) | | ||
| + | | [[documentation:vocabulary:snomed|SNOMED]] | Systematic Nomenclature of Medicine - Clinical Terms (IHTSDO) | | ||
| + | | [[documentation:vocabulary:snomed_veterinary|SNOMED Veterinary]] | SNOMED Veterinary | | ||
| + | | Specimen Type | OMOP Specimen Type | | ||
| + | | [[documentation:vocabulary:spl|SPL]] | Structured Product Labeling (FDA) | | ||
| + | | [[documentation:vocabulary:supplier|Supplier]] | OMOP Supplier | | ||
| + | | [[documentation:vocabulary:sus|SUS]] | Table of Procedures, Drugs, Orthoses, Protheses and Special Materials (Brazilian Unified Health System) | | ||
| + | | [[documentation:vocabulary:va_class|VA Class]] | VA National Drug File Class (VA) | | ||
| + | | [[documentation:vocabulary:va_product|VA Product]] | VA National Drug File Product (VA) | | ||
| - | For a consolidated one-document version click [[documentation:vocabulary:single-page|here]] | ||
| - | * [[.vocabulary:Introduction]] | ||
| - | * [[.vocabulary:Background]] | ||
| - | * [[.vocabulary:Definitions of Terms]] | ||
| - | * [[.vocabulary:Design Principles]] | ||
| - | * [[.vocabulary:Changes from Version 4]] | ||
| - | * [[.vocabulary:General Structure and Use]] | ||
| - | * [[.vocabulary:Information Model and Format]] | ||
| - | * [[.vocabulary:Domains and Vocabularies]] | ||
| - | * [[.vocabulary:Standard, Class and Source Concepts]] | ||
| - | * [[.vocabulary:Mapping and Conversion between Vocabularies]] | ||
| - | * [[.vocabulary:Data ETL]] | ||
| - | * [[.vocabulary:Domains and Vocabularies]] | ||
| - | * [[.vocabulary:Ethnicity]] | ||
| - | * [[.vocabulary:Gender]] | ||
| - | * [[.vocabulary:Race]] | ||
| - | * [[.vocabulary:Drug]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
| - | * [[.vocabulary:Route]] | ||
| - | * [[.vocabulary:Condition]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
| - | * [[.vocabulary:Procedure]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
| - | * [[.vocabulary:Device]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
| - | * [[.vocabulary:Measurement]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
| - | * [[.vocabulary:Measurement Value]] | ||
| - | * [[.vocabulary:Measurement Value Operator]] | ||
| - | * [[.vocabulary:Unit]] | ||
| - | * [[.vocabulary:Specimen]] | ||
| - | * [[.vocabulary:Specimen Anatomic Site]] | ||
| - | * [[.vocabulary:Visit]] | ||
| - | * [[.vocabulary:Place of Service]] | ||
| - | * [[.vocabulary:Provider Specialty]] | ||
| - | * [[.vocabulary:Revenue Code]] | ||
| - | * [[.vocabulary:Currency]] | ||
| - | * [[.vocabulary:Metadata]] | ||
| - | * [[.vocabulary:Relationship]] | ||
| - | * [[.vocabulary:Type Concepts]] | ||
| - | * [[.vocabulary:General Structure and Composition]] | ||
| - | * [[.vocabulary:Vocabularies]] | ||
documentation/vocabulary.1432560195.txt.gz · Last modified: 2015/05/25 13:23 by lee
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