documentation:vocabulary4.5
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| - | ======OMOP Implementation Specification======= | + | ===== Standardized Vocabulary V4.5 ===== |
| - | Standard Vocabularies in Observational Data Analysis (October 2013) PDF | + | |
| - | 1. Introduction | + | For a consolidated one-document version click [[documentation:vocabulary:single-page|here]] |
| - | 1.1 Background | + | |
| - | 1.2 Definition of Terms | + | |
| - | 1.3. Vocabulary Representation in the CDM1.3. Vocabulary Representation in the CDM | + | |
| - | 2. Changes from Vocabulary Version V4 | + | |
| - | 2.1. Fundamental Changes | + | |
| - | 2.1.1. Introduction of a Record Lifecycle | + | |
| - | 2.1.2. Handling of Unambiguous Mapping | + | |
| - | 2.1.3. Handling of Hierarchical Relationships between Concepts | + | |
| - | 2.1.4. Changes in Table and Field Names | + | |
| - | 2.1.5. Complete Code Lists | + | |
| - | 2.2. Changes to the Vocabularies | + | ===== Standardized Vocabularies ===== |
| - | 2.2.1. Added Vocabularies | + | |
| - | 2.2.2. Added Type Concept Vocabularies | + | |
| - | 2.2.3. Deprecated Vocabularies | + | |
| - | 2.2.4. Changes in Individual Vocabularies | + | |
| - | 2.3. Changes to Relationships | + | * [[documentation:vocabulary4.5:1. Introduction]] |
| - | 2.4. Changes to Ancestry Relationships | + | * [[documentation:vocabulary4.5:1.1. Background]] |
| - | 3. General Structure and Use of Vocabularies | + | * [[documentation:vocabulary4.5:1.2. Definition of Terms]] |
| - | 3.1. Using the Vocabulary | + | * [[documentation:vocabulary4.5:1.3. Vocabulary Representation in the CDM1.3. Vocabulary Representation in the CDM]] |
| - | 3.2. Domain Concepts | + | * [[documentation:vocabulary4.5:2. Changes from Vocabulary Version V4]] |
| - | 3.3. Type Concepts | + | * [[documentation:vocabulary4.5:2.1. Fundamental Changes]] |
| - | 4. Vocabulary Domains | + | * [[documentation:vocabulary4.5:2.1.1. Introduction of a Record Lifecycle]] |
| - | 4.1. Drug Domain | + | * [[documentation:vocabulary4.5:2.1.2. Handling of Unambiguous Mapping]] |
| - | 4.1.1. Vocabularies | + | * [[documentation:vocabulary4.5:2.1.3. Handling of Hierarchical Relationships between Concepts]] |
| - | 4.1.2. Implementation of RxNorm | + | * [[documentation:vocabulary4.5:2.1.4. Changes in Table and Field Names]] |
| - | 4.1.3. Implementation of NDF-RT and VA NDF | + | * [[documentation:vocabulary4.5:2.1.5. Complete Code Lists]] |
| - | 4.1.4. Implementation of ATC | + | * [[documentation:vocabulary4.5:2.2. Changes to the Vocabularies]] |
| - | 4.1.5. Implementation of ETC | + | * [[documentation:vocabulary4.5:2.2.1. Added Vocabularies]] |
| - | 4.1.6. Implementation of FDB Indication and Contraindication | + | * [[documentation:vocabulary4.5:2.2.2. Added Type Concept Vocabularies]] |
| - | 4.1.7. Levels | + | * [[documentation:vocabulary4.5:2.2.3. Deprecated Vocabularies]] |
| - | 4.1.8. Mapping | + | * [[documentation:vocabulary4.5:2.2.4. Changes in Individual Vocabularies]] |
| - | + | * [[documentation:vocabulary4.5:2.3. Changes to Relationships]] | |
| - | 4.2. Condition Domain | + | * [[documentation:vocabulary4.5:2.4. Changes to Ancestry Relationships]] |
| - | 4.2.1. Vocabularies | + | *[[documentation:vocabulary4.5:3. General Structure and Use of Vocabularies]] |
| - | 4.2.2. Relationships | + | *[[documentation:vocabulary4.5:3.1. Using the Vocabulary]] |
| - | 4.2.3. Levels | + | *[[documentation:vocabulary4.5:3.2. Domain Concepts]] |
| - | 4.2.4. Mapping | + | *[[documentation:vocabulary4.5:3.3. Type Concepts]] |
| - | + | *[[documentation:vocabulary4.5:4. Vocabulary Domains]] | |
| - | 4.3. Procedure Domain | + | *[[documentation:vocabulary4.5:4.1. Drug Domain]] |
| - | 4.3.1. Vocabularies | + | *[[documentation:vocabulary4.5:4.1.1. Vocabularies]] |
| - | 4.3.2. Relationships | + | *[[documentation:vocabulary4.5:4.1.2. Implementation of RxNorm]] |
| - | 4.3.3. Levels | + | *[[documentation:vocabulary4.5:4.1.3. Implementation of NDF-RT and VA NDF]] |
| - | 4.3.4. Mapping | + | *[[documentation:vocabulary4.5:4.1.4. Implementation of ATC]] |
| - | + | *[[documentation:vocabulary4.5:4.1.5. Implementation of ETC]] | |
| - | 4.4. Demographic Domain | + | *[[documentation:vocabulary4.5:4.1.6. Implementation of FDB Indication and Contraindication]] |
| - | 4.4.1. Vocabularies | + | *[[documentation:vocabulary4.5:4.1.7. Levels]] |
| - | 4.4.2. Implementation, Relationships, Levels and Mapping | + | *[[documentation:vocabulary4.5:4.1.8. Mapping]] |
| - | + | *[[documentation:vocabulary4.5:4.2. Condition Domain]] | |
| - | 4.5. Observation Domain | + | *[[documentation:vocabulary4.5:4.2.1. Vocabularies]] |
| - | 4.5.1. Vocabularies | + | *[[documentation:vocabulary4.5:4.2.2. Relationships]] |
| - | 4.5.2. Implementation of LOINC | + | *[[documentation:vocabulary4.5:4.2.3. Levels]] |
| - | 4.5.3. Implementation of Qualitative Lab Results | + | *[[documentation:vocabulary4.5:4.2.4. Mapping]] |
| - | 4.5.4. Implementation of UCUM | + | *[[documentation:vocabulary4.5:4.3. Procedure Domain]] |
| - | 4.5.5. Implementation of SNOMED-CT for Observations | + | *[[documentation:vocabulary4.5:4.3.1. Vocabularies]] |
| - | + | *[[documentation:vocabulary4.5:4.3.2. Relationships]] | |
| - | 4.6. Visit Domain | + | *[[documentation:vocabulary4.5:4.3.3. Levels]] |
| - | 4.6.1. Vocabularies | + | *[[documentation:vocabulary4.5:4.3.4. Mapping]] |
| - | 4.6.2. Relationships, Levels and Mapping | + | *[[documentation:vocabulary4.5:4.4. Demographic Domain]] |
| - | + | *[[documentation:vocabulary4.5:4.4.1. Vocabularies]] | |
| - | 4.7. Provider Domain | + | *[[documentation:vocabulary4.5:4.4.2. Implementation, Relationships, Levels and Mapping]] |
| - | 4.7.1. Vocabularies, Relationships, Levels and Mapping | + | *[[documentation:vocabulary4.5:4.5. Observation Domain]] |
| - | + | *[[documentation:vocabulary4.5:4.5.1. Vocabularies]] | |
| - | 4.8. Cost Domain | + | *[[documentation:vocabulary4.5:4.5.2. Implementation of LOINC]] |
| - | 4.8.1. Vocabularies, Relationships, Levels and Mapping | + | *[[documentation:vocabulary4.5:4.5.3. Implementation of Qualitative Lab Results]] |
| - | + | *[[documentation:vocabulary4.5:4.5.4. Implementation of UCUM]] | |
| - | 4.9. Cohort Domain | + | *[[documentation:vocabulary4.5:4.5.5. Implementation of SNOMED-CT for Observations]] |
| - | 4.9.1. Vocabularies | + | *[[documentation:vocabulary4.5:4.6. Visit Domain]] |
| - | 4.9.2. Implementation of Drugs of Interest | + | *[[documentation:vocabulary4.5:4.6.1. Vocabularies]] |
| - | 4.9.3. Implementation of Health Outcomes of Interest | + | *[[documentation:vocabulary4.5:4.6.2. Relationships, Levels and Mapping]] |
| - | 4.9.4. Implementation of Standardized MedDRA Queries | + | *[[documentation:vocabulary4.5:4.7. Provider Domain]] |
| - | + | *[[documentation:vocabulary4.5:4.7.1. Vocabularies, Relationships, Levels and Mapping]] | |
| - | 4.10. Type Concepts | + | *[[documentation:vocabulary4.5:4.8. Cost Domain]] |
| - | 4.10.1. Vocabularies, Relationships, Levels and Mapping | + | *[[documentation:vocabulary4.5:4.8.1. Vocabularies, Relationships, Levels and Mapping]] |
| - | + | *[[documentation:vocabulary4.5:4.9. Cohort Domain]] | |
| - | 5. Abbreviations | + | *[[documentation:vocabulary4.5:4.9.1. Vocabularies]] |
| - | 6. Appendices | + | *[[documentation:vocabulary4.5:4.9.2. Implementation of Drugs of Interest]] |
| - | 6.1. Appendix A: Statistic about Concepts, Vocabularies, Classes and Levels | + | *[[documentation:vocabulary4.5:4.9.3. Implementation of Health Outcomes of Interest]] |
| - | 6.2. Appendix B: Statistics about Relationships between Concepts | + | *[[documentation:vocabulary4.5:4.9.4. Implementation of Standardized MedDRA Queries]] |
| - | 6.3. Appendix C: Statistics about Mapping of Source Vocabularies | + | *[[documentation:vocabulary4.5:4.10. Type Concepts]] |
| - | 6.3.1. Coverage of code mapping in the Drug domain | + | *[[documentation:vocabulary4.5:4.10.1. Vocabularies, Relationships, Levels and Mapping]] |
| - | 6.3.2. Coverage of code mapping in the Condition domain | + | *[[documentation:vocabulary4.5:5. Abbreviations]] |
| - | 6.4. Appendix D: Source Vocabulary Versions and Sources | + | *[[documentation:vocabulary4.5:6. Appendices]] |
| - | 7. References | + | *[[documentation:vocabulary4.5:6.1. Appendix A: Statistic about Concepts, Vocabularies, Classes and Levels]] |
| + | *[[documentation:vocabulary4.5:6.2. Appendix B: Statistics about Relationships between Concepts]] | ||
| + | *[[documentation:vocabulary4.5:6.3. Appendix C: Statistics about Mapping of Source Vocabularies]] | ||
| + | *[[documentation:vocabulary4.5:6.3.1. Coverage of code mapping in the Drug domain]] | ||
| + | *[[documentation:vocabulary4.5:6.3.2. Coverage of code mapping in the Condition domain]] | ||
| + | *[[documentation:vocabulary4.5:6.4. Appendix D: Source Vocabulary Versions and Sources]] | ||
| + | *[[documentation:vocabulary4.5:7. References]] | ||
documentation/vocabulary4.5.txt · Last modified: 2016/08/03 21:33 by maura_beaton
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