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projects:workgroups:est-methods [2019/01/08 09:39]
schuemie
projects:workgroups:est-methods [2021/08/04 15:36]
schuemie
Line 8: Line 8:
  
 Specific goals: Specific goals:
-  * Develop the [[https://​ohdsi.github.io/​MethodsLibrary/|Methods library]]+  * Develop the [[https://​ohdsi.github.io/​Hades/|Health Analytics Data-to-Evidence Suite (HADES)]]
   * Specify [[development:​best_practices_estimation|OHDSI Best Practices for Estimating Population-Level Effects]]   * Specify [[development:​best_practices_estimation|OHDSI Best Practices for Estimating Population-Level Effects]]
  
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 **Members:​** **Members:​**
 <WRAP column 40%> <WRAP column 40%>
-  * Alejandro Schuler +  * Dani Prieto Alhambra 
-  * Chan Youseng +  * Seng Chan You 
-  * Dukyong Yoon+  * Aki Nishimura ​
   * George Hripcsak   * George Hripcsak
   * Ian Wong   * Ian Wong
Line 28: Line 28:
   * Jing Huang   * Jing Huang
   * Nicole Pratt   * Nicole Pratt
 +  * Ty Stanford
   * Nigam Shah   * Nigam Shah
 </​WRAP>​ </​WRAP>​
 <WRAP column 40%> <WRAP column 40%>
 +  * Teng Liaw
   * Patrick Ryan   * Patrick Ryan
   * Peter Rijnbeek   * Peter Rijnbeek
Line 40: Line 42:
   * Yong Chen   * Yong Chen
   * Yuxi Tian   * Yuxi Tian
 +  * Jianxiao Yang
 +  * Yuchen (Mimi) Guo
 </​WRAP>​ </​WRAP>​
  
Line 47: Line 51:
 ==== Meetings ==== ==== Meetings ====
  
-Because of time differences we have separate meetings for the Eastern (Asia-Pacific) and Western (Europe + Americas) hemispheres.+Because of time differences we have separate meetings for the Eastern (Asia-Pacific) and Western (Europe + Americas) hemispheres. ​Starting 2020, the Population-Level Estimation meetings will be combined with the Patient-Level Prediction meetings
  
 === Eastern hemisphere === === Eastern hemisphere ===
  
-Meetings are held every four weeks. Next meeting:+Meetings are held on the first Wednesday of every month. Next meeting:
  
-  * January 232019+  * September 12021
  
 Meetings will take place at these times (DST where appropriate):​ Meetings will take place at these times (DST where appropriate):​
  
-  * 5:30pm Adelaide+  * 5pm Sydney 
 +  * 4:30pm Adelaide
   * 4pm South Korea   * 4pm South Korea
   * 3pm Hong Kong / Taiwan   * 3pm Hong Kong / Taiwan
-  * 8am Central European time +  * 9am Central European time 
-  * 7am UK time+  * 8am UK time
  
-WebEx details:+Teams meeting ​details:
  
-URL: https://meetings.webex.com/collabs/​meetings/join?uuid=M6WE9AOKFETH2VEFPVCZWWBIT0-D1JL+URL: [[https://teams.microsoft.com/l/meetup-join/​19%3a103b681f42444150b1823664ce59ecd1%40thread.tacv2/​1602144468776?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%22dac1472c-1cc6-41dc-9cc7-c4720f7798de%22%7d|Join Microsoft Teams Meeting]]
  
 === Western hemisphere === === Western hemisphere ===
  
-Meetings are held every four weeks. Next meeting:+Meetings are held on the first Thursday of each month. Next meeting:
  
-  * January 172019+  * August 52021
  
 Meetings will take place at these times (DST where appropriate):​ Meetings will take place at these times (DST where appropriate):​
Line 80: Line 85:
   * 9am Los Angeles / Stanford   * 9am Los Angeles / Stanford
  
-WebEx details: +Teams meeting ​details:
- +
-URL: https://​meetings.webex.com/​collabs/#/​meetings/​detail?​uuid=M3T9BZV9RSB6YNDM8WDDZMI19D-D1JL+
  
 +URL: [[https://​teams.microsoft.com/​l/​meetup-join/​19%3a103b681f42444150b1823664ce59ecd1%40thread.tacv2/​1602144628432?​context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%22dac1472c-1cc6-41dc-9cc7-c4720f7798de%22%7d|Join Microsoft Teams Meeting]]
  
 ==== Workgroup meeting notes ====  ​ ==== Workgroup meeting notes ====  ​
Line 135: Line 139:
   * March 1, 2018: //Building the Large Evidence Generator//​. {{:​projects:​workgroups:​wg_building_the_large_evidence_generator.pptx|Slides}} and {{:​projects:​workgroups:​notes_1_march_2018.docx|minutes}}.   * March 1, 2018: //Building the Large Evidence Generator//​. {{:​projects:​workgroups:​wg_building_the_large_evidence_generator.pptx|Slides}} and {{:​projects:​workgroups:​notes_1_march_2018.docx|minutes}}.
   * March 7, 2018: //Building the Large Evidence Generator//​. {{:​projects:​workgroups:​wg_building_the_large_evidence_generator_-_eastern_hemisphere.pptx|Slides}} and {{:​projects:​workgroups:​notes_7_march_2018.docx|minutes}}.   * March 7, 2018: //Building the Large Evidence Generator//​. {{:​projects:​workgroups:​wg_building_the_large_evidence_generator_-_eastern_hemisphere.pptx|Slides}} and {{:​projects:​workgroups:​notes_7_march_2018.docx|minutes}}.
-  * March 15, 2018: //An OHDSI approach to  risk factor identification//​. {{:​projects:​workgroups:​wg_risk_factors.pptx|Slides}} and {{:​projects:​workgroups:​notes_15_march_2018.docx|minutes}}+  * March 15, 2018: //An OHDSI approach to risk factor identification//​. {{:​projects:​workgroups:​wg_risk_factors.pptx|Slides}} and {{:​projects:​workgroups:​notes_15_march_2018.docx|minutes}}
   * April 4, 2018: //Findings in Korea//. {{:​projects:​workgroups:​matching_hidden_variable_18.4.4_.pptx|Slides}} and {{:​projects:​workgroups:​notes_4_april.docx|minutes}}.   * April 4, 2018: //Findings in Korea//. {{:​projects:​workgroups:​matching_hidden_variable_18.4.4_.pptx|Slides}} and {{:​projects:​workgroups:​notes_4_april.docx|minutes}}.
   * May 10, 2018: //Study package skeleton and LEGEND updates//. {{:​projects:​workgroups:​wg_package_skeleton.pptx|Slides}} and {{:​projects:​workgroups:​notes_10_may.docx|minutes}}.   * May 10, 2018: //Study package skeleton and LEGEND updates//. {{:​projects:​workgroups:​wg_package_skeleton.pptx|Slides}} and {{:​projects:​workgroups:​notes_10_may.docx|minutes}}.
Line 148: Line 152:
   * December 12, 2018: //OHDSI updates//. {{ :​projects:​workgroups:​wg_ohdsi_update_dec_2018.pptx |Slides}} and {{ :​projects:​workgroups:​notes_12-december-2018.docx |minutes}}.   * December 12, 2018: //OHDSI updates//. {{ :​projects:​workgroups:​wg_ohdsi_update_dec_2018.pptx |Slides}} and {{ :​projects:​workgroups:​notes_12-december-2018.docx |minutes}}.
   * December 20, 2018: //OHDSI updates//. {{ :​projects:​workgroups:​wg_ohdsi_update_dec_2018_western.pptx |Slides}} and {{ :​projects:​workgroups:​notes_20_december_2018.docx |minutes}}.   * December 20, 2018: //OHDSI updates//. {{ :​projects:​workgroups:​wg_ohdsi_update_dec_2018_western.pptx |Slides}} and {{ :​projects:​workgroups:​notes_20_december_2018.docx |minutes}}.
 +  * January 31, 2019: //OHDSI Network Studies lessons learned//. {{ :​projects:​workgroups:​wg_network_studies_best_practices.pptx |Slides}}, {{ :​projects:​workgroups:​notes_31_jan_2019.docx |minutes}}, [[https://​drive.google.com/​a/​ohdsi.org/​file/​d/​12Uvhcu0F8py9WOVoAhSwuOpaLn7ssmRV/​view?​usp=drive_web | recording]] 
 +  * February 20, 2019: //Large scale evidence generation for the utilisation and safety of biologic medicines//​. {{ :​projects:​workgroups:​large_scale_evidence_generation_for_the_utilisation_and_safety_of_biologic_medicines_ohdsi_jan2019.pptx |Slides}} and {{ :​projects:​workgroups:​notes_20-feb-2019.docx |minutes}}. 
 +  * February 28, 2019: //Network study obstacles//​. {{ :​projects:​workgroups:​wg_network_study_obstacles.pptx |Slides}} and {{ :​projects:​workgroups:​notes_28_feb_2019.docx |minutes}}. 
 +  * March 13, 2019: //Network study issues and solutions//​. {{ :​projects:​workgroups:​wg_network_studies_issues_eastern_hemisphere_.pptx |Slides}} and {{ :​projects:​workgroups:​notes_13-march-2019.docx |minutes}}. 
 +  * April 25, 2019: //​Comparative SCCS//. {{ :​projects:​workgroups:​csccs_ohdsi_ple_wg_20190425.pptx |Slides}} and {{ :​projects:​workgroups:​notes_25_april.docx |minutes}}. 
 +  * May 23, 2019: //Covariate selection strategies, Negative controls, and Empirical calibration//​. {{ :​projects:​workgroups:​covariatesnegcontrolscalibrationv01.pptx |Slides}} and {{ :​projects:​workgroups:​notes_23_may.docx |minutes}}. 
 +  * May 29, 2019: //Comparing Ticagrelor and clopidogrel//​. {{ :​projects:​workgroups:​ohdsi_tica_19.5.29.pdf |Slides}} and {{ :​projects:​workgroups:​notes_29_may.docx |minutes}}. 
 +  * June 12, 2019: //CDM, opioid and other research at UNSW//. {{ :​projects:​workgroups:​20190612_ohdsi_epbrn_presentation_v0.3.pdf |Slides}} and {{ :​projects:​workgroups:​notes_june_12_2019.docx |minutes}}. 
 +  * June 26, 2019: //ETL: Beyond the basics//. {{ :​projects:​workgroups:​wg_etl_best_practices_v02.pptx |Slides}} 
 +  * January 8, 2020: //Joint PLP and PLP meeting (East)//. {{ :​projects:​workgroups:​wgmeeting8jan2020.docx |Notes}} 
 +  * January 9, 2020: //Joint PLP and PLP meeting (West)//. [[https://​drive.google.com/​file/​d/​1V5AiQjrPbEFKiw8-bq2PJw24B-8xV8JE/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​wg_meeting_notes_9jan2020.docx |Notes}} 
 +  * February 5, 2020: //ETL & DQ, sensitivity & feasibility//​. [[https://​drive.google.com/​file/​d/​1Z1oGBo-CRwwco_w_BQffAa4N0W8sMWM6/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​wgnotes5feb2020.docx |Notes}}  
 +  * February 6, 2020: //Using GPUs for logistic regression//​. [[https://​drive.google.com/​file/​d/​1IkT_4j9yUgk2yY7Qtr9_j5bo_lXaDfzz/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​methodswg6feb2020.docx |Notes}} 
 +  * March 4, 2020: //​CohortDiagnostics//​. [[https://​drive.google.com/​file/​d/​1vU95gtYG1y37xXDN6EhuKtDh4LJ338U8/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​notes_plp_ple_meeting_marc_4_2020.docx |Notes}} 
 +  * March 5, 2020: //​Evaluating ML for propensity scores & CohortDiagnostics//​. {{ :​projects:​workgroups:​notes_plp_marc_5_2020.docx |Notes}} 
 +  * May 6, 2020: //Disease Risk Scores//. [[https://​drive.google.com/​file/​d/​1kTxsN_jjN1wLgMEhsLHZ3AByONf6dSbF/​view?​usp=sharing|Recording]],​ {{ :​projects:​workgroups:​drs.pptx |Slides}}, and {{ :​projects:​workgroups:​wg_meeting_may_6_2020.docx |Notes}} 
 +  * May 7, 2020: //Disease Risk Scores//. [[https://​drive.google.com/​file/​d/​1x24-Cp2BoVIm4JYjdAhbsPO7NsDf9x0J/​view?​usp=sharing|Recording]],​ {{ :​projects:​workgroups:​drs.pptx |Slides}}, and {{ :​projects:​workgroups:​plpplemeeting7may2020.docx |Notes}} 
 +  * June 3, 2020: //Seek COVER//. {{ :​projects:​workgroups:​noteswgmeeting3june2020.docx |Notes}} 
 +  * June 4, 2020: //Seek COVER//. [[https://​drive.google.com/​file/​d/​1RtdMfvmzOAfsGaKpDh0zg1A3L7WC3Slz/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​noteswgmeeting4june2020.docx |Notes}} 
 +  * July 1, 2020: //​Representation Learning//. [[https://​drive.google.com/​file/​d/​1ZzURKYbc77WhtZXVI-pGvJpOOcWxhvvj/​view?​usp=sharing|Recording]],​ {{ :​projects:​workgroups:​representation-learning_ps_model.pdf |Slides}}, and {{ :​projects:​workgroups:​noteswgmeeting2020-7-1.docx|Notes}} 
 +  * July 2, 2020: //​Distributed model fitting//. [[https://​drive.google.com/​file/​d/​1UGhoT8BcDs6h-W84IAEeU6VHF2flRugU/​view?​usp=sharing|Recording]] 
 +  * August 6, 2020: //Feature importance//​. {{ :​projects:​workgroups:​pleplp_featureimport.pptx |Slides}} 
 +  * September 2, 2020: //​Heterogeneity of Treatment Effects//. [[https://​drive.google.com/​file/​d/​1RBMhV8x5HkcUFsT0nYMnFEoUUSf8rrVT/​view?​usp=sharing|Recording]] 
 +  * September 3, 2020: //​Non-normal meta-analysis//​. {{ :​projects:​workgroups:​wg_non-normal_meta-analysis.pptx |Slides}} and [[https://​drive.google.com/​file/​d/​1A9ktgPPlPTK97q9Tr61xva5XgpRjtuHg/​view?​usp=sharing|Recording]] 
 +  * October 1, 2020:  //​Synthesizing data using GANs//. [[https://​drive.google.com/​file/​d/​1l89R1gLK_QhxejKTVEmIQoTwJJfQ_Yur/​view?​usp=sharing|Recording]] and [[https://​arxiv.org/​abs/​2005.13510v3|Paper]] 
 +  * October 7, 2020: //Learning curves in predictive modeling//. [[https://​drive.google.com/​file/​d/​1DosnYqogxS9LzWkWCEnxNt_0Y4RASJ-u/​view?​usp=sharing|Recording]] 
 +  * November 4, 2020: //White Bandicoot//​. [[https://​drive.google.com/​file/​d/​1bDPLrkX7BmKiE_c59C3CU7mrVE7KxLv7/​view?​usp=sharing|Recording]] 
 +  * November 5, 2020: //Methods for the emulation of target surgical trials//. [[https://​drive.google.com/​file/​d/​18uc63bz3gnrfhwr7CwjnEYO_16Qr6aHQ/​view?​usp=sharing|Recording]] 
 +  * December 2, 2020: //​Representational Learning//. [[https://​drive.google.com/​file/​d/​1_RlmTpqI7BBdRu4dV4kkC50cT8ZpMVro/​view?​usp=sharing|Recording]] 
 +  * December 3, 2020: //​Pharmacoepi,​ pharmacogenomics and drug safety: early results and a plan for analysis of UK biobank data// 
 +  * January 6, 2021: //2021 Methods Research Agenda (East)//. [[https://​drive.google.com/​file/​d/​1xEV9m97tHW57piMdNjVLEtj70M0kskEe/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​wg_research_agenda_brainstorm.pptx |Slides}} 
 +  * January 7, 2021: //2021 Methods Research Agenda (West)//. [[https://​drive.google.com/​file/​d/​1US25jhUxGe1ouOAS4yBfkASHqRpTpmNE/​view?​usp=sharing|Recording]] and {{ :​projects:​workgroups:​wg_research_agenda_brainstorm.pptx |Slides}} 
 +  * February 3, 2021: //2021 Methods Research Agenda (East)//. [[https://​drive.google.com/​file/​d/​1faZgdGB1LmD-yrf7hA7FjtDIdLl0gBcL/​view?​usp=sharing|Recording]] 
 +  * February 4, 2021: //2021 Methods Research Agenda (West)//. [[https://​drive.google.com/​file/​d/​142KHzyYzrz-pfxOwBKFp6OFU00WLicev/​view?​usp=sharing|Recording]] 
 +  * July 1, 2021: //Empirical calibration//​. [[https://​drive.google.com/​file/​d/​1ADKFq_aL5CN4iTUiBkrpSv6h6WTEpPuK/​view?​usp=sharing|Recording]] 
 +  * July 7, 2021: //Empirical calibration and Positive Control Imputation//​. [[https://​drive.google.com/​file/​d/​1bkeuq5ABFMQOyn4cyavQsCLV9tPPjog1/​view?​usp=sharing|Recording]]
 ~~NOTOC~~ ~~NOTOC~~
 +
projects/workgroups/est-methods.txt · Last modified: 2021/08/06 05:12 by schuemie