The group discussed SQL showing how to map ICDO Site/Histology combinations to pre-coordinated Condition concepts.
The group discussed SQL showing how to find all Site/Histology combinations containing a particular ICDO site or histology.
It was announced that ICDO is currently already implemented within Athena and folks should try mapping their ICDO data.
The group discussed the plan to adopt NAACCR as OMOPS's standard vocabulary of cancer diagnosis modifiers and the plant to transition NAACCR from a standard vocabulary to source vocabulary by mapping NAACCR to the Nebraska Lexicon.
Concern was expressed regarding the timeline for when the Nebraska Lexicon would be completed.
There was consensus in the group that the OMOP community needs to standardize the representation of cancer diagnosis modifiers. Some members of the group might take a swipe at recommending cancer diagnosis modifiers ahead of the Nebraska Lexicon completion date.
It was announced that the Hemonc.org drug regimen ontology has been released within Athena.
The group discussed the current state of the Hemonc.org vocabulary. Regimens and regimen components mapped to RxNorm ingredients. Plus a better drug oncology classification system.
The group asked about the future possibility of including regimen dosing, cycles and indications. Dmytry informed the group that these items would be part of future releases.
documentation/oncology/meeting_notes_2019_jun-11.txt · Last modified: 2019/08/18 13:31 by mgurley