User Tools

Site Tools


projects:workgroups:phenotyping

This is an old revision of the document!


Phenotyping workgroup

Objectives:

Project Leads: Martijn Schuemie, PhD,Marc Suchard, MD, PhD

The plan:

  • Jan 2015: final XPRESS pipeline ready
  • March 2015: 10 models built
  • May 2015: Test portability of 10 models
  • July 2015: Run the XPRESS vs. “queries” comparison at a non-stanford site.
  • Oct 2015: Decide the approach to use in OHDSI

Levels of membership/commitment:

  • Prioritizing the list of phenotypes to build models for
  • Apply a trained model at your site and assess performance (i.e. examine portability)
  • Run the XPRESS pipeline, and build models for a set of phenotypes.
  • Get in the guts of the pipeline, mess with feature engineering, etc.
  • Try different approaches (models for episodic events)

The commitments (all tentative, please think about finalizing):

George Hripsack (+ Barnett Chiu, Sunny Chang):

  • Apply a trained model from other sites.
  • Run XPRESS for new phenotypes.

Nicholas Tatonetti (+ Alexandre Yahi)

  • Prioritizing phenotypes
  • Applying a trained model from other sites

Jon Duke (+ need name)

  • Apply a trained model from other sites
  • Run XPRES to build new models

[thinking about availability]

  • Tiffany Callahan (UC Denver, biostats)
  • Daniella Meeker (Cheryl Chiu)

Start Date: January 2015.

Repository: TBD

WG Minutes: Need to find a good place

WG Agendas: Need to find a good place

Meetings

Schedule: Ad hoc

Call in Number: Need to add

Attendee access code: Need to add

Minutes and Agendas

To add

Discussions

projects/workgroups/phenotyping.1416406173.txt.gz · Last modified: 2014/11/19 14:09 by jbanda