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projects:workgroups:wg_meeting_02032016

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Minutes_Meeting_02032016

Attendees

Hua Xu, Jon Duke, George Hripcsak, Karthik Natarajan, Anupama Gururaj, Mark Khayter, Min Jiang, Alexandre Yahi, Noemie Elhadad, Juan M Banda, Olga Patterson, Lian

Agenda

  1. Minimal Model Presentation – Alex
  2. Note-type mapping Presentation – Karthik
  3. Share existing ontologies from Vanderbilt (Hua) and Regenstrief (Jon)
  4. Share strategies for combining data from different searches – Jon
  5. Report on WG for commenting – Hua
  6. Wrappers for cTAKES and Metamap – Min
  7. Improvements to search engine set up using MT samples – Min
  8. Textual Data Representation – Discussion
  9. Goals of 2016
  10. Change of meeting time

Minutes

  1. Minimal model presntation - Alex
  2. Collect minimum set of modifiers for all clinical entities that support use of rule to derive clinical concepts: Alex
    • cTAKES is being run on clinical notes programmatically. Alex will present the minimal model in the next meeting.
  3. Aggregate and share note-type metadata from various sources: Karthik
    • LOINC note type mapping would be a very useful resource. We should generate hierarchical representation of note-types as an ontology. Karthink will present his work to date at the next meeting.
    • Existing ontology for note types to be shared : Vanderbilt (Hua) and Regenstrief (Jon)
  4. Simple search set up for MT samples: MinPresentation
    • Presentation
    • The interface being developed should present a summary with visualization for patients/notes.
    • We will add Boolean query options to improve the search
    • We will implement a Ranking algorithm
    • Assign fake patient ID's to the notes to generate the visualization portion.
    • Generate a program like Circe to define the patient cohort
    • Next steps: How to move the data from textual searches stored in a table outside of OMOP to the OMOP?
      • Structured searches from CDW and textual searches can be combined using existing strategies. Jon will share the slides of his presentation on combining data from different searches
      • Run NLP on the ElasticSearch to extract information
  5. Wrappers for cTAKES and Metamap
  6. Report on the WG - Hua will generate and share with the members for comments
  7. The best ways to represent textual data need to be determined

Action Items

  1. Minimal Model Presentation - Alex
  2. Note-type mapping Presentation - Karthink
  3. Share existing ontologies from Vanderbilt (Hua) and Regenstrief (Jon)
  4. Share strategies for combining data from different searches - Jon
  5. Report on WG for commenting - Hua
  6. Wrappers for cTAKES and Metamap - Min
  7. Improvements to search engine set up using MT samples - Min
  8. Textual Data Representation - Discussion
projects/workgroups/wg_meeting_02032016.1457386614.txt.gz · Last modified: 2016/03/07 21:36 by anu_gururaj